MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-130-P1a1

Family name MIR-130 (all species)
Seed AGUGCAA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-130c-2
Paralogues Dre-Mir-130-P1a2  Dre-Mir-130-P1b1  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Dre-Mir-130-P2b1  Dre-Mir-130-P3a1  Dre-Mir-130-P3b1  Dre-Mir-130-P4a1 
Orthologues Aca-Mir-130-P1a  Ami-Mir-130-P1a  Cli-Mir-130-P1a  Cmi-Mir-130-P1a  Cpi-Mir-130-P1a  Gga-Mir-130-P1a  Gja-Mir-130-P1a  Gmo-Mir-130-P1a1  Lch-Mir-130-P1a  Loc-Mir-130-P1a  Mal-Mir-130-P1a1  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Sha-Mir-130-P1a  Spt-Mir-130-P1a  Sto-Mir-130-P1a  Tgu-Mir-130-P1a  Xtr-Mir-130-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr5: 13288840-13288898 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1a1)		 Mir-130-P1a1 chr5: 13288840-13288898 [+] UCSC Ensembl
Mir-130-P2a1 chr5: 13289363-13289425 [+] UCSC Ensembl
Mir-130-P3a1 chr5: 13296331-13296395 [+] UCSC Ensembl
Mir-130-P4a1 chr5: 13299343-13299404 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAGUUUCUUUACUGUUGUUGUUGACCAGGGCCCUUUUUCUGUUGUACUACUGUGCAGUCAGAUGAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGACAAAAAAAGAGGAAAGAAAGAAA
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Structure
        10          20        30        40        50         
UCAGUUUCUUUACUGUUG--|    GA    G        UC         A  GUGCAG 
                    UUGUU  CCAG GCCCUUUU  UGUUGUACU CU      \
                    AACAG  GGUU CGGGAAAA  AUAACGUGA GA      U
AAAGAAAGAAAGGAGAAAAA^    UC    A        UU         C  GUAGAC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-130-P1a1_5p*
mirBase accessionMIMAT0031969
Sequence 
0- GCCCUUUUUCUGUUGUACUACU -22
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Mature sequence

Dre-Mir-130-P1a1_3p
mirBase accessionMIMAT0001828
Sequence 
37- CAGUGCAAUAUUAAAAGGGCAU -59
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Proposed targets TargetScanFish: dre-miR-130c