MirGeneDB 3.0

MirGeneDB ID

Aca-Mir-130-P1a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-130c
Paralogues Aca-Mir-130-P1b  Aca-Mir-130-P1c  Aca-Mir-130-P2a  Aca-Mir-130-P2b  Aca-Mir-130-P3a  Aca-Mir-130-P4a 
Orthologues Ami-Mir-130-P1a  Cli-Mir-130-P1a  Cmi-Mir-130-P1a  Cpi-Mir-130-P1a  Dre-Mir-130-P1a1  Dre-Mir-130-P1a2  Gga-Mir-130-P1a  Gja-Mir-130-P1a  Gmo-Mir-130-P1a1  Gmo-Mir-130-P1a2  Lch-Mir-130-P1a  Loc-Mir-130-P1a  Mal-Mir-130-P1a1  Mal-Mir-130-P1a2  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Sha-Mir-130-P1a  Spt-Mir-130-P1a  Sto-Mir-130-P1a  Tgu-Mir-130-P1a  Tni-Mir-130-P1a2  Xla-Mir-130-P1a3  Xla-Mir-130-P1a4  Xtr-Mir-130-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)
GL343282.1: 1201646-1201704 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1a)
Mir-130-P4a GL343282.1: 1188362-1188424 [-] UCSC Ensembl
Mir-130-P3a GL343282.1: 1189904-1189968 [-] UCSC Ensembl
Mir-130-P2a GL343282.1: 1200201-1200263 [-] UCSC Ensembl
Mir-130-P1a GL343282.1: 1201646-1201704 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAAGACAUUGAGGUCUGUUGCUGUCCGGAGCCCUUUUUCUGUUGUACUACUGGCAAGUAUGAGUAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGGCAGGCUAAGCUCCUCCUCCCUAC
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Structure
        10          20        30        40        50         
GAAAGACAUUGAGGUCUG--|     U    A        UC         A  GGCAAG 
                    UUGCUG CCGG GCCCUUUU  UGUUGUACU CU      \
                    GACGGU GGUU CGGGAAAA  AUAACGUGA GA      U
CAUCCCUCCUCCUCGAAUCG^     C    A        UU         C  UGAGUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Sk Ta Ta To Wh
Star sequence

Aca-Mir-130-P1a_5p*

mirBase accessionNone
Sequence
0- GCCCUUUUUCUGUUGUACUACU -22
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Mature sequence

Aca-Mir-130-P1a_3p

mirBase accessionMIMAT0021744
Sequence
37- CAGUGCAAUAUUAAAAGGGCAU -59
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