MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-130-P1a1

Family name MIR-130 (all species)
Seed AGUGCAA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-130a
Paralogues Gmo-Mir-130-P1a2  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Gmo-Mir-130-P2b1  Gmo-Mir-130-P3b1 
Orthologues Aca-Mir-130-P1a  Ami-Mir-130-P1a  Cli-Mir-130-P1a  Cmi-Mir-130-P1a  Cpi-Mir-130-P1a  Dre-Mir-130-P1a1  Gga-Mir-130-P1a  Gja-Mir-130-P1a  Lch-Mir-130-P1a  Loc-Mir-130-P1a  Mal-Mir-130-P1a1  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Sha-Mir-130-P1a  Spt-Mir-130-P1a  Sto-Mir-130-P1a  Tgu-Mir-130-P1a  Xtr-Mir-130-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig400286: 466-522 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAUGUAGACAUACCUGGUGGAGGUCCGCUGCCCUCUUUCUGUUGUCCUACUGUGAAACACUCAGCAGUGCAAUAUUAAAAGGGCAUCGGCUCCUCGCUGCUCAUCGGCUCCUCGCU
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Structure
        10        20          30        40        50        
GGAUGUAGACAUACCUGGUG-    U-|  C      C  UC     UC  A  GUGAA 
                     GAGG  CCG UGCCCU UU  UGUUG  CU CU     \
                     CUCC  GGC ACGGGA AA  AUAAC  GA GA     A
UCGCUCCUCGGCUACUCGUCG    UC^  U      A  UU     GU  C  CUCAC 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-130-P1a1_5p*
mirBase accessionMIMAT0044051
Sequence 
0- GCCCUCUUUCUGUUGUCCUACU -22
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Mature sequence

Gmo-Mir-130-P1a1_3p
mirBase accessionMIMAT0044052
Sequence 
35- CAGUGCAAUAUUAAAAGGGCAU -57
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