MirGeneDB ID | Oan-Mir-130-P1a |
Family name |
MIR-130 (all species) |
Seed |
AGUGCAA |
Species |
Platypus (Ornithorhynchus anatinus) |
MiRBase ID |
oan-mir-130c
|
Paralogues |
Oan-Mir-130-P1b
Oan-Mir-130-P1c
Oan-Mir-130-P2a
Oan-Mir-130-P2b
Oan-Mir-130-P3b
|
Orthologues |
Aca-Mir-130-P1a
Ami-Mir-130-P1a
Cli-Mir-130-P1a
Cmi-Mir-130-P1a
Cpi-Mir-130-P1a
Dre-Mir-130-P1a1
Dre-Mir-130-P1a2
Gga-Mir-130-P1a
Gja-Mir-130-P1a
Gmo-Mir-130-P1a1
Gmo-Mir-130-P1a2
Lch-Mir-130-P1a
Loc-Mir-130-P1a
Mal-Mir-130-P1a1
Mal-Mir-130-P1a2
Mdo-Mir-130-P1a
Mun-Mir-130-P1a
Pbv-Mir-130-P1a
Sha-Mir-130-P1a
Spt-Mir-130-P1a
Sto-Mir-130-P1a
Tgu-Mir-130-P1a
Tni-Mir-130-P1a2
Xla-Mir-130-P1a3
Xla-Mir-130-P1a4
Xtr-Mir-130-P1a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (mOrnAna1.p.v1_plustraces) |
NC_041748.1: 23340935-23340990 [-]
|
Precursor (pre-Mir +30nt flank) |
GAGGGGGCUGCCGGAUGGCCGCCGGCCGGAGCCCUUUUGCCGUUGUGCUACUGAGCGUGAGGAGCAGUGCAAUGGUAAAAGGGCAUCGGCUGGCGGGGUCCCCGCCGGGCCGCCGC
Get precursor sequence
|
Structure | 10 20 30 40 50
GAGGGGGCUGCCGGAUGG--| GA UG A GAGC
CCGCCGGCCG GCCCUUUUGCCGUUG CU CU G
GGCGGUCGGC CGGGAAAAUGGUAAC GA GA U
CGCCGCCGGGCCGCCCCUGG^ UA GU C GGAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Oan-Mir-130-P1a_5p* |
mirBase accession | MIMAT0006907 |
Sequence |
0- GCCCUUUUGCCGUUGUGCUACU -22
Get sequence
|
Mature sequence |
Oan-Mir-130-P1a_3p |
mirBase accession | MIMAT0006908 |
Sequence |
34- CAGUGCAAUGGUAAAAGGGCAU -56
Get sequence
|