Mir-130-P1c

MirGeneDB ID

Oan-Mir-130-P1c

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-130a

Paralogues

Oan-Mir-130-P1a Oan-Mir-130-P1b Oan-Mir-130-P2a Oan-Mir-130-P2b Oan-Mir-130-P3b

Orthologues

Aca-Mir-130-P1c Ami-Mir-130-P1c Bta-Mir-130-P1c Cfa-Mir-130-P1c Cja-Mir-130-P1c Cpi-Mir-130-P1c Cpo-Mir-130-P1c Dno-Mir-130-P1c Eca-Mir-130-P1c Ete-Mir-130-P1c Gja-Mir-130-P1c Hsa-Mir-130-P1c Laf-Mir-130-P1c Lch-Mir-130-P1c Mdo-Mir-130-P1c Mml-Mir-130-P1c Mmr-Mir-130-P1c Mmu-Mir-130-P1c Mun-Mir-130-P1c Neu-Mir-130-P1c Ocu-Mir-130-P1c Pab-Mir-130-P1c Pbv-Mir-130-P1c Rno-Mir-130-P1c Sha-Mir-130-P1c Spt-Mir-130-P1c Sto-Mir-130-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041730.1: 19258657-19258718 [-]

Precursor
(pre-Mir +30nt flank)

GCCCGGUCCUGUCCUUCGCUCCCGGCCGGAGCUCUUUUCACAUUGUGCUACUGUCUGCGCCCGUCACUAGCAGUGCAAUGUAAAAAGGGCAUCGGCCGGGCAGCGCCUACCAUCACCGGUGU

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Structure

        10         20         30        40        50        60
GCCCGGUCCUGUCCUUC-   -|       GA        C      UG  A  GUCUGCG 
                  GCU CCCGGCCG  GCUCUUUU ACAUUG  CU CU       C
                  CGA GGGCCGGC  CGGGAAAA UGUAAC  GA GA       C
UGUGGCCACUACCAUCCG   C^       UA        A      GU  C  UCACUGC 
120       110       100        90        80        70

Deep sequencing

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Comment

There are multiple Drosha sites +1-+3 on the 5p arm.

3' NTU

Yes

Motifs

Tissue expression

Br	Ce	He	Ki	Te

Star sequence

Oan-Mir-130-P1c_5p*

mirBase accession

MIMAT0007098

Sequence

0- GCUCUUUUCACAUUGUGCUACU -22

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Mature sequence

Oan-Mir-130-P1c_3p

mirBase accession

None

Sequence

40- CAGUGCAAUGUAAAAAGGGCAU -62

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