MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-130-P1c

Family name MIR-130 (all species)
Seed AGUGCAA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-130a
Paralogues Cpo-Mir-130-P2a  Cpo-Mir-130-P2b  Cpo-Mir-130-P3b  Cpo-Mir-130-P4a 
Orthologues Aca-Mir-130-P1c  Ami-Mir-130-P1c  Bta-Mir-130-P1c  Cfa-Mir-130-P1c  Cpi-Mir-130-P1c  Dno-Mir-130-P1c  Ete-Mir-130-P1c  Gja-Mir-130-P1c  Hsa-Mir-130-P1c  Lch-Mir-130-P1c  Mdo-Mir-130-P1c  Mml-Mir-130-P1c  Mmu-Mir-130-P1c  Mun-Mir-130-P1c  Oan-Mir-130-P1c  Ocu-Mir-130-P1c  Pbv-Mir-130-P1c  Rno-Mir-130-P1c  Sha-Mir-130-P1c  Spt-Mir-130-P1c  Sto-Mir-130-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_86: 2921906-2921967 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CAGCAGCAGGCACUCCUGCUGCCGGCCGGCGCUCUUUUCACAUUGUGCUACUGUCUGCACUCGUCACAAGCAGUGCAAUGUUAAAAGGGCAUCGGCGGGCAGUGCUCCAGCACCGCCUGCCC
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Structure
        10          20        30        40        50        60
CAGCAGCAGGCACUCCU--|     G    GC        C      UG  A  GUCUGCA 
                   GCUGCC GCCG  GCUCUUUU ACAUUG  CU CU       C
                   UGACGG CGGC  CGGGAAAA UGUAAC  GA GA       U
CCCGUCCGCCACGACCUCG^     G    UA        U      GU  C  ACACUGC 
120       110       100        90        80        70
Deep sequencing
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CommentThe post-transcriptional addition of a terminal 3' uridine is supported by the existence of multiple examples of 3' moR reads that start with the U in human and several other vertebrates. All other taxa are treated accordingly.
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cpo-Mir-130-P1c_5p*
mirBase accessionMIMAT0046980
Sequence 
0- GCUCUUUUCACAUUGUGCUACU -22
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Mature sequence

Cpo-Mir-130-P1c_3p
mirBase accessionMIMAT0046981
Sequence 
40- CAGUGCAAUGUUAAAAGGGCAU -62
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