| MirGeneDB ID | Mdo-Mir-130-P1c |
|---|
| Family name |
MIR-130 (all species) |
|---|
| Seed |
AGUGCAA |
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| Species |
Gray short-tailed opossum (Monodelphis domestica) |
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| MiRBase ID |
mdo-mir-130a
|
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| Paralogues |
Mdo-Mir-130-P1a
Mdo-Mir-130-P1b
Mdo-Mir-130-P2b
Mdo-Mir-130-P3b
Mdo-Mir-130-P4a
|
|---|
| Orthologues |
Aca-Mir-130-P1c
Ami-Mir-130-P1c
Bta-Mir-130-P1c
Cfa-Mir-130-P1c
Cja-Mir-130-P1c
Cpi-Mir-130-P1c
Cpo-Mir-130-P1c
Dno-Mir-130-P1c
Eca-Mir-130-P1c
Ete-Mir-130-P1c
Gja-Mir-130-P1c
Hsa-Mir-130-P1c
Laf-Mir-130-P1c
Lch-Mir-130-P1c
Mml-Mir-130-P1c
Mmr-Mir-130-P1c
Mmu-Mir-130-P1c
Mun-Mir-130-P1c
Neu-Mir-130-P1c
Oan-Mir-130-P1c
Ocu-Mir-130-P1c
Pab-Mir-130-P1c
Pbv-Mir-130-P1c
Rno-Mir-130-P1c
Sha-Mir-130-P1c
Spt-Mir-130-P1c
Sto-Mir-130-P1c
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(monDom5_add) |
5: 291845609-291845670 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AACCAAGGCAGCUUUCCACUCCUGGCCAGAGCUCUUUUCACAUUGUGCUACUGUCUGCACCUAUCACUAGCAGUGCAAUGUAAAAAGGGCAUUGGCUGGGCAGUGCCAACCAGCACCAACAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AACCAAGGCAGCUUUCC- -| UG A C UG A GUCUGCA
ACU CC GCCAG GCUCUUUU ACAUUG CU CU C
UGA GG CGGUU CGGGAAAA UGUAAC GA GA C
CACAACCACGACCAACCG C^ GU A A GU C UCACUAU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | The post-transcriptional addition of a terminal 3' uridine is supported by the existence of multiple examples of 3' DcRNA reads that start with the U in human and several other vertebrates. All other taxa are treated accordingly. |
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Star sequence |
Mdo-Mir-130-P1c_5p* |
| mirBase accession | MIMAT0026664 |
|---|
| Sequence |
0- GCUCUUUUCACAUUGUGCUACU -22
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-130a-5p
|
|---|
| Mature sequence |
Mdo-Mir-130-P1c_3p |
| mirBase accession | MIMAT0004106 |
|---|
| Sequence |
40- CAGUGCAAUGUAAAAAGGGCAU -62
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-130a-3p
|
|---|
