MirGeneDB 3.0

MirGeneDB ID

Mdo-Mir-130-P4a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-130b
Paralogues Mdo-Mir-130-P1a  Mdo-Mir-130-P1b  Mdo-Mir-130-P1c  Mdo-Mir-130-P2b  Mdo-Mir-130-P3b 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
3: 511101361-511101418 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P4a)
Mir-130-P4a 3: 511101361-511101418 [-] UCSC Ensembl
Mir-130-P1a 3: 511102163-511102221 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCACCUCCCCUUGGCCUGGGCCUGCCCGAAGCUCUUUCCCUGUUGCCCUGCUGUCCGGUCACCUAGCAGUGCAAUUGUGAAAGGGCAUUGGUGAGGCCUACCUCGGAGGAGCAUCGGG
Get precursor sequence
Structure
        10          20        30        40        50        
CCACCUCCCCUUGGCCU--|     GC    A        CCU     C     GUCCG 
                   GGGCCU  CCGA GCUCUUUC   GUUGC CUGCU     G
                   UCCGGA  GGUU CGGGAAAG   UAACG GACGA     U
GGGCUACGAGGAGGCUCCA^     GU    A        UGU     U     UCCAC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14)
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-130-P4a_5p*

mirBase accessionMIMAT0028564
Sequence
0- GCUCUUUCCCUGUUGCCCUGCU -22
Get sequence
Proposed targets TargetScanVert: mdo-miR-130b-5p
Mature sequence

Mdo-Mir-130-P4a_3p

mirBase accessionMIMAT0028565
Sequence
36- CAGUGCAAUUGUGAAAGGGCAU -58
Get sequence
Proposed targets TargetScanVert: mdo-miR-130b-3p