MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-130-P4a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-130b
Paralogues Xtr-Mir-130-P1a  Xtr-Mir-130-P1b  Xtr-Mir-130-P2a  Xtr-Mir-130-P2b  Xtr-Mir-130-P3a 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr1: 145394714-145394773 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P4a)
Mir-130-P4a chr1: 145394714-145394773 [-] UCSC Ensembl
Mir-130-P2a chr1: 145402713-145402775 [-] UCSC Ensembl
Mir-130-P1a chr1: 145403558-145403616 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCAGUAAGUGGGUGCCCAGGCCGCCUGACACUCUUUCCCUGUUGCACUACUGUGGCAGUGAAUAAAGCAGUGCAAUGAUGAAAGGGCAUCAGUCUGCAGCUGAUCUAAGCACCGUGCCC
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Structure
        10        20           30        40        50         
GGCAGUAAGUGGGUGCCCA   C  ---|   CA       CC         A  GUGGCA 
                   GGC GC   CUGA  CUCUUUC  UGUUGCACU CU      G
                   UCG CG   GACU  GGGAAAG  GUAACGUGA GA      U
CCCGUGCCACGAAUCUAG-   A  UCU^   AC       UA         C  AAUAAG 
.       110        100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
An Br Em Em He Ve
Star sequence

Xtr-Mir-130-P4a_5p*

mirBase accessionNone
Sequence
0- ACUCUUUCCCUGUUGCACUACU -22
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Mature sequence

Xtr-Mir-130-P4a_3p

mirBase accessionMIMAT0003593
Sequence
38- CAGUGCAAUGAUGAAAGGGCAU -60
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Proposed targets TargetScanVert: xtr-miR-130b