MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-130-P4a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-130b
Paralogues Gga-Mir-130-P1a  Gga-Mir-130-P1b  Gga-Mir-130-P2a  Gga-Mir-130-P2b  Gga-Mir-130-P3a 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 15: 694747-694807 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P4a)		 Mir-130-P4a 15: 694747-694807 [-] UCSC Ensembl
Mir-130-P3a 15: 695881-695944 [-] UCSC Ensembl
Mir-130-P2a 15: 702346-702408 [-] UCSC Ensembl
Mir-130-P1a 15: 703569-703627 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGGCGGCCAGGGCCACCGGGCGGGCUGCCCCUCUUUCCCUGUUGCACUACUGUCACGGUCGCAGCGAGCAGUGCAAUAAUGAAAGGGCGUCAGUGCGCCGGGGAGCGGCGAGAGCCGGGC
Get precursor sequence
Structure
        10          20         30        40        50          
CCGGCGGCCAGGGCCAC-- G    G    -|C  U     CC         A  GUCACGG 
                   C GGCG GCUG C CC CUUUC  UGUUGCACU CU       \
                   G CCGC UGAC G GG GAAAG  AUAACGUGA GA       U
CGGGCCGAGAGCGGCGAGG G    G    U^C  -     UA         C  GCGACGC 
 .       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-130-P4a_5p*
mirBase accessionMIMAT0026530
Sequence 
0- CCUCUUUCCCUGUUGCACUACU -22
Get sequence
Proposed targets TargetScanVert: gga-miR-130b-5p
miRDB: MIMAT0026530
Mature sequence

Gga-Mir-130-P4a_3p
mirBase accessionMIMAT0001165
Sequence 
39- CAGUGCAAUAAUGAAAGGGCGU -61
Get sequence
Proposed targets TargetScanVert: gga-miR-130b-3p
miRDB: MIMAT0001165