MirGeneDB 3.0

MirGeneDB ID

Bta-Mir-130-P4a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Cow (Bos taurus)
MiRBase ID bta-mir-130b
Paralogues Bta-Mir-130-P1c  Bta-Mir-130-P2a  Bta-Mir-130-P2b  Bta-Mir-130-P3b 
Orthologues Aca-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037344.1: 72108902-72108961 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P4a)
Mir-130-P4a NC_037344.1: 72108902-72108961 [-] UCSC Ensembl
Mir-130-P2a NC_037344.1: 72109221-72109280 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGGGAGAGGCGCUGGCAGGCCUGCCUGACACUCUUUCCCUGUUGCACUACUGUGCGCCCCUGGCAAGCAGUGCAAUGAUGAAAGGGCAUCGGUCAGGCCCCACCCACCACCCGCAGCGC
Get precursor sequence
Structure
        10          20        30        40        50         
CCGGGAGAGGCGCUGGCA--|     C    CA       CC         A  GUGCGC 
                    GGCCUG CUGA  CUCUUUC  UGUUGCACU CU      C
                    CCGGAC GGCU  GGGAAAG  GUAACGUGA GA      C
CGCGACGCCCACCACCCACC^     U    AC       UA         C  ACGGUC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-130-P4a_5p*

mirBase accessionNone
Sequence
0- ACUCUUUCCCUGUUGCACUACU -22
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Mature sequence

Bta-Mir-130-P4a_3p

mirBase accessionMIMAT0009224
Sequence
38- CAGUGCAAUGAUGAAAGGGCAU -60
Get sequence
Proposed targets TargetScanVert: bta-miR-130b