MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-130-P4a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-130-P1a  Sto-Mir-130-P1b  Sto-Mir-130-P1c  Sto-Mir-130-P2a  Sto-Mir-130-P2b  Sto-Mir-130-P3a  Sto-Mir-130-P3b  Sto-Mir-130-P3c 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01012481.1: 69134-69193 [+]
Precursor
(pre-Mir +30nt flank)
CUUGCUGAUGCACAUCCUCAGGCUCCUGCCGCUCUGUCAGUGUUGCGCUACUGUGGACCUGGCGCGAGCAGUGCAAUAUUGAAAGAGCAGCAGUGGCCCGAGCACAGUCGACUAGUACGU
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Structure
        10          20        30        40        50         
CUUGCUGAUGCACAUCC--| A   UC    C     G             A  GUGGAC 
                   UC GGC  CUGC GCUCU UCAGUGUUGCGCU CU      C
                   AG CCG  GACG CGAGA AGUUAUAACGUGA GA      U
UGCAUGAUCAGCUGACACG^ C   GU    A     A             C  GCGCGG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
To
Star sequence

Sto-Mir-130-P4a_5p*
mirBase accessionNone
Sequence 
0- GCUCUGUCAGUGUUGCGCUACU -22
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Mature sequence

Sto-Mir-130-P4a_3p
mirBase accessionNone
Sequence 
38- CAGUGCAAUAUUGAAAGAGCAG -60
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