MirGeneDB 3.0

MirGeneDB ID

Pbv-Mir-130-P4a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-130b
Paralogues Pbv-Mir-130-P1a  Pbv-Mir-130-P1b  Pbv-Mir-130-P1c  Pbv-Mir-130-P2a  Pbv-Mir-130-P2b  Pbv-Mir-130-P3a 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE953167.1: 507030-507091 [+]
Clustered miRNAs
(< 50kb from Mir-130-P4a)
Mir-130-P1a KE953167.1: 486603-486663 [+]
Mir-130-P2a KE953167.1: 488663-488725 [+]
Mir-130-P3a KE953167.1: 505152-505216 [+]
Mir-130-P4a KE953167.1: 507030-507091 [+]
Precursor
(pre-Mir +30nt flank)
UUCAAAAAGCAUGCUACGGAGCAGUCUGCUACUCUUUCCUUGUUGCGCUACUGUUCAGCUUCGCCUCUAGCAGUGCAAUAAUGAAAGGGCAUCAGCCCCUCCACAAACCAGCGGGGGGGGGG
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Structure
        10           20        30        40        50        60
UUCAAAAAGCAUGCUAC---|   CA U   CUA       C          A  GUUCAGC 
                    GGAG  G CUG   CUCUUUC UUGUUGCGCU CU       U
                    CCUC  C GAC   GGGAAAG AAUAACGUGA GA       U
GGGGGGGGGGCGACCAAACA^   CC -   UAC       U          C  UCUCCGC 
120       110       100         90        80        70
Deep sequencing
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CommentThe 3' of the 3p arm is monoadenylated as well.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Pbv-Mir-130-P4a_5p* (predicted)

mirBase accessionNone
Sequence
0- ACUCUUUCCUUGUUGCGCUACU -22
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Mature sequence

Pbv-Mir-130-P4a_3p

mirBase accessionMIMAT0038928
Sequence
40- CAGUGCAAUAAUGAAAGGGCAU -62
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