MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-130-P1c

Family name MIR-130 (all species)
Seed AGUGCAA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-130a
Paralogues Pbv-Mir-130-P1a  Pbv-Mir-130-P1b  Pbv-Mir-130-P2a  Pbv-Mir-130-P2b  Pbv-Mir-130-P3a  Pbv-Mir-130-P4a 
Orthologues Aca-Mir-130-P1c  Ami-Mir-130-P1c  Bta-Mir-130-P1c  Cfa-Mir-130-P1c  Cpi-Mir-130-P1c  Cpo-Mir-130-P1c  Dno-Mir-130-P1c  Ete-Mir-130-P1c  Gja-Mir-130-P1c  Hsa-Mir-130-P1c  Lch-Mir-130-P1c  Mdo-Mir-130-P1c  Mml-Mir-130-P1c  Mmu-Mir-130-P1c  Mun-Mir-130-P1c  Oan-Mir-130-P1c  Ocu-Mir-130-P1c  Rno-Mir-130-P1c  Sha-Mir-130-P1c  Spt-Mir-130-P1c  Sto-Mir-130-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE953228.1: 125041-125098 [+]
Precursor
(pre-Mir +30nt flank)
CGGAUGCACUGGGCACGGCCCCUGCCCGAGGCUCUUUUCACAUUGUGCUACUGAGCCCAACCCAAGCAGUGCAAUGUAAAAAGGGCAUUGGGUUGGUGGCCACAGCAGCAAGAAUUCU
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Structure
        10         20         30        40        50        
CGGAUGCACUGGGCACG-   -| U      G        C      UG  A  GAGCC 
                  GCC CC GCCCGA GCUCUUUU ACAUUG  CU CU     C
                  CGG GG UGGGUU CGGGAAAA UGUAAC  GA GA     A
UCUUAAGAACGACGACAC   U^ U      A        A      GU  C  ACCCA 
      110       100        90        80        70        60
Deep sequencing
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CommentThe monouridylation of the 3p arm is supported by the existence of multiple examples of 3' moR reads that start with the U in human and several other vertebrates. All other taxa are treated accordingly.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Pbv-Mir-130-P1c_5p* (predicted)

mirBase accessionMIMAT0038926
Sequence
0- GCUCUUUUCACAUUGUGCUACU -22
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Mature sequence

Pbv-Mir-130-P1c_3p

mirBase accessionMIMAT0038927
Sequence
36- CAGUGCAAUGUAAAAAGGGCAU -58
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