MirGeneDB ID | Lch-Mir-130-P1c |
---|---|
Family name | MIR-130 (all species) |
Seed | AGUGCAA |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-130-P1a Lch-Mir-130-P1b Lch-Mir-130-P1d Lch-Mir-130-P2a Lch-Mir-130-P2b Lch-Mir-130-P2d Lch-Mir-130-P3a Lch-Mir-130-P3b Lch-Mir-130-P3c Lch-Mir-130-P4a |
Orthologues | Aca-Mir-130-P1c Ami-Mir-130-P1c Bta-Mir-130-P1c Cfa-Mir-130-P1c Cja-Mir-130-P1c Cpi-Mir-130-P1c Cpo-Mir-130-P1c Dno-Mir-130-P1c Eca-Mir-130-P1c Ete-Mir-130-P1c Gja-Mir-130-P1c Hsa-Mir-130-P1c Laf-Mir-130-P1c Mdo-Mir-130-P1c Mml-Mir-130-P1c Mmr-Mir-130-P1c Mmu-Mir-130-P1c Mun-Mir-130-P1c Neu-Mir-130-P1c Oan-Mir-130-P1c Ocu-Mir-130-P1c Pab-Mir-130-P1c Pbv-Mir-130-P1c Rno-Mir-130-P1c Sha-Mir-130-P1c Spt-Mir-130-P1c Sto-Mir-130-P1c |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH130223.1: 57005-57064 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | CGGUGACUUUGUGUAUUUGUGUUGUCUGAAGCCCUUUUCACAUUGUACUACUGUAUGCUAUCCAAAGGCAGUGCAAUAUCAAAAGGGCAUUAGCCAUCCUCUUCCUCUCAUCACUUGUGGGet precursor sequence |
Structure | 10 20 30 40 50 CGGUGACUUUGUGUAUUUGUGU-- U A CAC A-| GUAUGC UG CUGA GCCCUUUU AUUGUACU CU \ AC GAUU CGGGAAAA UAACGUGA GA U GGUGUUCACUACUCUCCUUCUCCU C A CUA CG^ AACCUA . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Star sequence | Lch-Mir-130-P1c_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GCCCUUUUCACAUUGUACUACU -22
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|
Mature sequence | Lch-Mir-130-P1c_3p (predicted) |
mirBase accession | None |
Sequence |
38- CAGUGCAAUAUCAAAAGGGCAU -60
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|