MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-130-P1c

Family name MIR-130 (all species)
Seed AGUGCAA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-130-P1a  Lch-Mir-130-P1b  Lch-Mir-130-P1d  Lch-Mir-130-P2a  Lch-Mir-130-P2b  Lch-Mir-130-P2d  Lch-Mir-130-P3a  Lch-Mir-130-P3b  Lch-Mir-130-P3c  Lch-Mir-130-P4a 
Orthologues Aca-Mir-130-P1c  Ami-Mir-130-P1c  Bta-Mir-130-P1c  Cfa-Mir-130-P1c  Cja-Mir-130-P1c  Cpi-Mir-130-P1c  Cpo-Mir-130-P1c  Dno-Mir-130-P1c  Eca-Mir-130-P1c  Ete-Mir-130-P1c  Gja-Mir-130-P1c  Hsa-Mir-130-P1c  Laf-Mir-130-P1c  Mdo-Mir-130-P1c  Mml-Mir-130-P1c  Mmr-Mir-130-P1c  Mmu-Mir-130-P1c  Mun-Mir-130-P1c  Neu-Mir-130-P1c  Oan-Mir-130-P1c  Ocu-Mir-130-P1c  Pab-Mir-130-P1c  Pbv-Mir-130-P1c  Rno-Mir-130-P1c  Sha-Mir-130-P1c  Spt-Mir-130-P1c  Sto-Mir-130-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH130223.1: 57005-57064 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGGUGACUUUGUGUAUUUGUGUUGUCUGAAGCCCUUUUCACAUUGUACUACUGUAUGCUAUCCAAAGGCAGUGCAAUAUCAAAAGGGCAUUAGCCAUCCUCUUCCUCUCAUCACUUGUGG
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Structure
        10        20          30        40        50          
CGGUGACUUUGUGUAUUUGUGU--  U    A        CAC        A-| GUAUGC 
                        UG CUGA GCCCUUUU   AUUGUACU  CU      \
                        AC GAUU CGGGAAAA   UAACGUGA  GA      U
GGUGUUCACUACUCUCCUUCUCCU  C    A        CUA        CG^ AACCUA 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Star sequence

Lch-Mir-130-P1c_5p* (predicted)

mirBase accessionNone
Sequence
0- GCCCUUUUCACAUUGUACUACU -22
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Mature sequence

Lch-Mir-130-P1c_3p (predicted)

mirBase accessionNone
Sequence
38- CAGUGCAAUAUCAAAAGGGCAU -60
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