MirGeneDB ID | Lch-Mir-130-P1d |
---|---|
Family name | MIR-130 (all species) |
Seed | AGUGCAA |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-130-P1a Lch-Mir-130-P1b Lch-Mir-130-P1c Lch-Mir-130-P2a Lch-Mir-130-P2b Lch-Mir-130-P2d Lch-Mir-130-P3a Lch-Mir-130-P3b Lch-Mir-130-P3c Lch-Mir-130-P4a |
Orthologues | |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH128272.1: 328151-328212 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | GGAGCCCUUCCUCAGCACCCGAUGGCCUAGGCCCUUUUUGUGUUGUACUACUGGCCACUGAAGCUGUAGCAGUGCAAUAUUAAAAAGGGCAUUGGCUUUCGGCCACACAGCACGUGGCUCCUGet precursor sequence |
Structure | 10 20 30 40 50 GGAGCCCUUCCUCAGCAC-- U UAG -| A GGCCACU CCGA GGCC GCCCUUUUU GUGUUGUACU CU \ GGCU UCGG CGGGAAAAA UAUAACGUGA GA G UCCUCGGUGCACGACACACC U UUA U^ C UGUCGAA 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Lch-Mir-130-P1d_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GCCCUUUUUGUGUUGUACUACU -22
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|
Mature sequence | Lch-Mir-130-P1d_3p (predicted) |
mirBase accession | None |
Sequence |
39- CAGUGCAAUAUUAAAAAGGGCAU -62
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|