MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-130-P1d

Family name MIR-130 (all species)
Seed AGUGCAA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-130-P1a  Lch-Mir-130-P1b  Lch-Mir-130-P1c  Lch-Mir-130-P2a  Lch-Mir-130-P2b  Lch-Mir-130-P2d  Lch-Mir-130-P3a  Lch-Mir-130-P3b  Lch-Mir-130-P3c  Lch-Mir-130-P4a 
Orthologues
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH128272.1: 328151-328212 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGAGCCCUUCCUCAGCACCCGAUGGCCUAGGCCCUUUUUGUGUUGUACUACUGGCCACUGAAGCUGUAGCAGUGCAAUAUUAAAAAGGGCAUUGGCUUUCGGCCACACAGCACGUGGCUCCU
Get precursor sequence
Structure
        10          20        30         40        50          
GGAGCCCUUCCUCAGCAC--    U    UAG         -|         A  GGCCACU 
                    CCGA GGCC   GCCCUUUUU GUGUUGUACU CU       \
                    GGCU UCGG   CGGGAAAAA UAUAACGUGA GA       G
UCCUCGGUGCACGACACACC    U    UUA         U^         C  UGUCGAA 
120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-130-P1d_5p* (predicted)

mirBase accessionNone
Sequence
0- GCCCUUUUUGUGUUGUACUACU -22
Get sequence
Mature sequence

Lch-Mir-130-P1d_3p (predicted)

mirBase accessionNone
Sequence
39- CAGUGCAAUAUUAAAAAGGGCAU -62
Get sequence