MirGeneDB ID | Lch-Mir-130-P3b |
---|---|
Family name | MIR-130 (all species) |
Seed | AGUGCAA |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-130-P1a Lch-Mir-130-P1b Lch-Mir-130-P1c Lch-Mir-130-P1d Lch-Mir-130-P2a Lch-Mir-130-P2b Lch-Mir-130-P2d Lch-Mir-130-P3a Lch-Mir-130-P3c Lch-Mir-130-P4a |
Orthologues | Bta-Mir-130-P3b Cfa-Mir-130-P3b Cja-Mir-130-P3b Cmi-Mir-130-P3b Cpo-Mir-130-P3b Dno-Mir-130-P3b Dre-Mir-130-P3b1 Eca-Mir-130-P3b Gmo-Mir-130-P3b1 Hsa-Mir-130-P3b Laf-Mir-130-P3b Mdo-Mir-130-P3b Mml-Mir-130-P3b Neu-Mir-130-P3b Oan-Mir-130-P3b Pab-Mir-130-P3b Sha-Mir-130-P3b Sto-Mir-130-P3b |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH126567.1: 190727-190791 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | AAUUUUUGCCUCUUGUUUCCAGAUCCUGGAACCCUAUCAAUGUUGCCUCUGCUGUGUAGAUGGCUGAGAGUAGUGCAAUAUUGCUUAUAGGGUUUUAGUGUUUGGAAAAAACCAGUAUCAGAAUAGet precursor sequence |
Structure | 10 20 30 40 50 60 AAUUUUUGCCUCUUGUU-- UC ---| CU GUGUAGA UCCAGA CUGGAACCCUAU CAAUGUUGC CUGCU \ AGGUUU GAUUUUGGGAUA GUUAUAACG GAUGA U AUAAGACUAUGACCAAAAA GU UUC^ U- GAGUCGG 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UGUG in loop |
Star sequence | Lch-Mir-130-P3b_5p* (predicted) |
mirBase accession | None |
Sequence |
0- ACCCUAUCAAUGUUGCCUCUGCU -23
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|
Mature sequence | Lch-Mir-130-P3b_3p (predicted) |
mirBase accession | None |
Sequence |
40- UAGUGCAAUAUUGCUUAUAGGGUUU -65
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|