MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-130-P3b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-130-P1a  Lch-Mir-130-P1b  Lch-Mir-130-P1c  Lch-Mir-130-P1d  Lch-Mir-130-P2a  Lch-Mir-130-P2b  Lch-Mir-130-P2d  Lch-Mir-130-P3a  Lch-Mir-130-P3c  Lch-Mir-130-P4a 
Orthologues Bta-Mir-130-P3b  Cfa-Mir-130-P3b  Cja-Mir-130-P3b  Cmi-Mir-130-P3b  Cpo-Mir-130-P3b  Dno-Mir-130-P3b  Dre-Mir-130-P3b1  Eca-Mir-130-P3b  Gmo-Mir-130-P3b1  Hsa-Mir-130-P3b  Laf-Mir-130-P3b  Mdo-Mir-130-P3b  Mml-Mir-130-P3b  Neu-Mir-130-P3b  Oan-Mir-130-P3b  Pab-Mir-130-P3b  Sha-Mir-130-P3b  Sto-Mir-130-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126567.1: 190727-190791 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUUUUGCCUCUUGUUUCCAGAUCCUGGAACCCUAUCAAUGUUGCCUCUGCUGUGUAGAUGGCUGAGAGUAGUGCAAUAUUGCUUAUAGGGUUUUAGUGUUUGGAAAAAACCAGUAUCAGAAUA
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Structure
        10          20        30           40        50        60 
AAUUUUUGCCUCUUGUU--      UC            ---|        CU     GUGUAGA 
                   UCCAGA  CUGGAACCCUAU   CAAUGUUGC  CUGCU       \
                   AGGUUU  GAUUUUGGGAUA   GUUAUAACG  GAUGA       U
AUAAGACUAUGACCAAAAA      GU            UUC^        U-     GAGUCGG 
   120       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Star sequence

Lch-Mir-130-P3b_5p* (predicted)

mirBase accessionNone
Sequence
0- ACCCUAUCAAUGUUGCCUCUGCU -23
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Mature sequence

Lch-Mir-130-P3b_3p (predicted)

mirBase accessionNone
Sequence
40- UAGUGCAAUAUUGCUUAUAGGGUUU -65
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