MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-130-P3b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-454
Paralogues Sha-Mir-130-P1a  Sha-Mir-130-P1b  Sha-Mir-130-P1c  Sha-Mir-130-P2b  Sha-Mir-130-P4a 
Orthologues Bta-Mir-130-P3b  Cfa-Mir-130-P3b  Cja-Mir-130-P3b  Cmi-Mir-130-P3b  Cpo-Mir-130-P3b  Dno-Mir-130-P3b  Dre-Mir-130-P3b1  Eca-Mir-130-P3b  Gmo-Mir-130-P3b1  Hsa-Mir-130-P3b  Laf-Mir-130-P3b  Lch-Mir-130-P3b  Mdo-Mir-130-P3b  Mml-Mir-130-P3b  Neu-Mir-130-P3b  Oan-Mir-130-P3b  Pab-Mir-130-P3b  Sto-Mir-130-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 GL856812.1: 2872514-2872578 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P3b)		 Mir-130-P1b GL856812.1: 2852996-2853058 [+] UCSC Ensembl
Mir-130-P3b GL856812.1: 2872514-2872578 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUUUCCUGUUGAUACUACCAGAUCCUAGAACCCUAUCGAUAUUGUCUCUGCUGUGUACAUAGCUGUGAGUAGUGCAAUAUUGCUUAUAGGGUUUUAGUGUUUGGAAAGAACAGUGGCCAGGCUG
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Structure
        10          20        30           40        50        60 
CAUUUCCUGUUGAUACUA--     UC            ---|        CU     GUGUACA 
                    CCAGA  CUAGAACCCUAU   CGAUAUUGU  CUGCU       \
                    GGUUU  GAUUUUGGGAUA   GUUAUAACG  GAUGA       U
GUCGGACCGGUGACAAGAAA     GU            UUC^        U-     GUGUCGA 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-130-P3b_5p*
mirBase accessionNone
Sequence 
0- ACCCUAUCGAUAUUGUCUCUGCU -23
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Mature sequence

Sha-Mir-130-P3b_3p
mirBase accessionMIMAT0022815
Sequence 
40- UAGUGCAAUAUUGCUUAUAGGGUUU -65
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