Mir-130-P3b

MirGeneDB ID

Hsa-Mir-130-P3b

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-454

Paralogues

Hsa-Mir-130-P1c Hsa-Mir-130-P2a Hsa-Mir-130-P2b Hsa-Mir-130-P4a

Orthologues

Bta-Mir-130-P3b Cfa-Mir-130-P3b Cmi-Mir-130-P3b Cpo-Mir-130-P3b Dno-Mir-130-P3b Dre-Mir-130-P3b1 Gmo-Mir-130-P3b1 Lch-Mir-130-P3b Mdo-Mir-130-P3b Mml-Mir-130-P3b Oan-Mir-130-P3b Sha-Mir-130-P3b Sto-Mir-130-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr17: 59137785-59137849 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P3b)

Mir-130-P3b chr17: 59137785-59137849 [-] UCSC Ensembl
Mir-130-P2b chr17: 59151147-59151208 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAAAAUUCUGUUUAUCACCAGAUCCUAGAACCCUAUCAAUAUUGUCUCUGCUGUGUAAAUAGUUCUGAGUAGUGCAAUAUUGCUUAUAGGGUUUUGGUGUUUGGAAAGAACAAUGGGCAGGCUG

Get precursor sequence

Structure

        10          20        30           40        50        60 
AAAAAAUUCUGUUUAUCA--     UC            ---|        CU     GUGUAAA 
                    CCAGA  CUAGAACCCUAU   CAAUAUUGU  CUGCU       \
                    GGUUU  GGUUUUGGGAUA   GUUAUAACG  GAUGA       U
GUCGGACGGGUAACAAGAAA     GU            UUC^        U-     GUCUUGA 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	3-	3-	3-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	5-	5-	5-	5-	5-	5-	5-	6-	6-	6-	6-	6-

Star sequence

Hsa-Mir-130-P3b_5p*

mirBase accession

MIMAT0003884

Sequence

0- ACCCUAUCAAUAUUGUCUCUGCU -23

Get sequence

Proposed targets

microrna.org: MIMAT0003884
TargetScanVert: hsa-miR-454-5p
TargetMiner: hsa-miR-454-5p
miRDB: MIMAT0003884

Mature sequence

Hsa-Mir-130-P3b_3p

mirBase accession

MIMAT0003885

Sequence

40- UAGUGCAAUAUUGCUUAUAGGGUUU -65

Get sequence

Proposed targets

microrna.org: MIMAT0003885
TargetScanVert: hsa-miR-454-3p
TargetMiner: hsa-miR-454-3p
miRDB: MIMAT0003885