MirGeneDB ID | Laf-Mir-130-P3b |
Family name |
MIR-130 (all species) |
Seed |
AGUGCAA |
Species |
African bush elephant (Loxodonta africana) |
MiRBase ID |
|
Paralogues |
Laf-Mir-130-P1c
Laf-Mir-130-P2a
Laf-Mir-130-P2b
Laf-Mir-130-P4a
|
Orthologues |
Bta-Mir-130-P3b
Cfa-Mir-130-P3b
Cja-Mir-130-P3b
Cmi-Mir-130-P3b
Cpo-Mir-130-P3b
Dno-Mir-130-P3b
Dre-Mir-130-P3b1
Eca-Mir-130-P3b
Gmo-Mir-130-P3b1
Hsa-Mir-130-P3b
Lch-Mir-130-P3b
Mdo-Mir-130-P3b
Mml-Mir-130-P3b
Neu-Mir-130-P3b
Oan-Mir-130-P3b
Pab-Mir-130-P3b
Sha-Mir-130-P3b
Sto-Mir-130-P3b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000001905.1_Loxafr3.0) |
GL010058.1: 9743009-9743072 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAAUUUCCUGUUUAUUACCAGAUCCUAGAACCCUAUCGAUAUUGUCUCUGCUGUAUAAAUAGUUCUGAGUAGUGCAAUAUUGCUUAUAGGGUUUUAGUGUUUGGGAAGAACGAUGGGCAGACU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAAAUUUCCUGUUUAUUA- UC ---| CU GUAUAAA
CCAGA CUAGAACCCUAU CGAUAUUGU CUGCU \
GGUUU GAUUUUGGGAUA GUUAUAACG GAUGA U
UCAGACGGGUAGCAAGAAG GU UUC^ U- GUCUUGA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Laf-Mir-130-P3b_5p* |
mirBase accession | None |
Sequence |
0- ACCCUAUCGAUAUUGUCUCUGCU -23
Get sequence
|
Mature sequence |
Laf-Mir-130-P3b_3p |
mirBase accession | None |
Sequence |
40- UAGUGCAAUAUUGCUUAUAGGGUU -64
Get sequence
|