MirGeneDB ID | Cmi-Mir-130-P3b |
Family name |
MIR-130 (all species) |
Seed |
AGUGCAA |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-130-P1a
Cmi-Mir-130-P1b
Cmi-Mir-130-P2a
Cmi-Mir-130-P2b
Cmi-Mir-130-P3a
Cmi-Mir-130-P4a
|
Orthologues |
Bta-Mir-130-P3b
Cfa-Mir-130-P3b
Cja-Mir-130-P3b
Cpo-Mir-130-P3b
Dno-Mir-130-P3b
Dre-Mir-130-P3b1
Eca-Mir-130-P3b
Gmo-Mir-130-P3b1
Hsa-Mir-130-P3b
Laf-Mir-130-P3b
Lch-Mir-130-P3b
Mdo-Mir-130-P3b
Mml-Mir-130-P3b
Neu-Mir-130-P3b
Oan-Mir-130-P3b
Pab-Mir-130-P3b
Sha-Mir-130-P3b
Sto-Mir-130-P3b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI636009.1: 742939-743003 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GACUGUGACUUUUGACACUCAAGUACUGGGACCCUAUCGAUAUUGCCUCUGCUUUGUAGAUGGCUGUGAGUAGUGCAAUAUUGCUUAUAGGGUUUCAGUGCUUGGGAACUUCAACAGUUUGGUGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GACUGUGACUUUUGACA-- GG ---| CU UUGUAGA
CUCAAGUACUG ACCCUAU CGAUAUUGC CUGCU \
GGGUUCGUGAC UGGGAUA GUUAUAACG GAUGA U
AGUGGUUUGACAACUUCAA UU UUC^ U- GUGUCGG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Cmi-Mir-130-P3b_5p* |
mirBase accession | None |
Sequence |
0- ACCCUAUCGAUAUUGCCUCUGCU -23
Get sequence
|
Mature sequence |
Cmi-Mir-130-P3b_3p |
mirBase accession | None |
Sequence |
40- UAGUGCAAUAUUGCUUAUAGGGUUU -65
Get sequence
|