Mir-130-P3b

MirGeneDB ID

Mml-Mir-130-P3b

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-454

Paralogues

Mml-Mir-130-P1c Mml-Mir-130-P2a Mml-Mir-130-P2b Mml-Mir-130-P4a

Orthologues

Bta-Mir-130-P3b Cfa-Mir-130-P3b Cja-Mir-130-P3b Cmi-Mir-130-P3b Cpo-Mir-130-P3b Dno-Mir-130-P3b Dre-Mir-130-P3b1 Eca-Mir-130-P3b Gmo-Mir-130-P3b1 Hsa-Mir-130-P3b Laf-Mir-130-P3b Lch-Mir-130-P3b Mdo-Mir-130-P3b Neu-Mir-130-P3b Oan-Mir-130-P3b Pab-Mir-130-P3b Sha-Mir-130-P3b Sto-Mir-130-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014351.1: 37662589-37662653 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P3b)

Mir-130-P2b CM014351.1: 37648697-37648758 [+] UCSC Ensembl
Mir-130-P3b CM014351.1: 37662589-37662653 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAAAAUUCUGUUUAUCACCAGAUCCUAGAACCCUAUCAAUAUUGUCUCUGCUGUGUAAAUAGUUCUGAGUAGUGCAAUAUUGCUUAUAGGGUUUUGGUGUUUGGGAAGAACAAUGGGCAGGCUG

Get precursor sequence

Structure

        10          20        30           40        50        60 
AAAAAAUUCUGUUUAUCA--     UC            ---|        CU     GUGUAAA 
                    CCAGA  CUAGAACCCUAU   CAAUAUUGU  CUGCU       \
                    GGUUU  GGUUUUGGGAUA   GUUAUAACG  GAUGA       U
GUCGGACGGGUAACAAGAAG     GU            UUC^        U-     GUCUUGA 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Star sequence

Mml-Mir-130-P3b_5p*

mirBase accession

MIMAT0026880

Sequence

0- ACCCUAUCAAUAUUGUCUCUGCU -23

Get sequence

Proposed targets

TargetScanVert: mml-miR-454-5p

Mature sequence

Mml-Mir-130-P3b_3p

mirBase accession

MIMAT0006338

Sequence

40- UAGUGCAAUAUUGCUUAUAGGGUUU -65

Get sequence

Proposed targets

TargetScanVert: mml-miR-454-3p