Mir-130-P2b

MirGeneDB ID

Hsa-Mir-130-P2b

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-301a

Paralogues

Hsa-Mir-130-P1c Hsa-Mir-130-P2a Hsa-Mir-130-P3b Hsa-Mir-130-P4a

Orthologues

Aca-Mir-130-P2b Ami-Mir-130-P2b Bta-Mir-130-P2b Cfa-Mir-130-P2b Cli-Mir-130-P2b Cmi-Mir-130-P2b Cpi-Mir-130-P2b Cpo-Mir-130-P2b Dno-Mir-130-P2b Dre-Mir-130-P2b1 Ete-Mir-130-P2b Gga-Mir-130-P2b Gja-Mir-130-P2b Gmo-Mir-130-P2b1 Lch-Mir-130-P2b Loc-Mir-130-P2b Mal-Mir-130-P2b2 Mdo-Mir-130-P2b Mml-Mir-130-P2b Mmu-Mir-130-P2b Mun-Mir-130-P2b Oan-Mir-130-P2b Ocu-Mir-130-P2b Pbv-Mir-130-P2b Rno-Mir-130-P2b Sha-Mir-130-P2b Spt-Mir-130-P2b Sto-Mir-130-P2b Tgu-Mir-130-P2b Xla-Mir-130-P2b3 Xla-Mir-130-P2b4 Xtr-Mir-130-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr17: 59151147-59151208 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P2b)

Mir-130-P3b chr17: 59137785-59137849 [-] UCSC Ensembl
Mir-130-P2b chr17: 59151147-59151208 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCCUUUCCUACUUAUUACUGCUAACGAAUGCUCUGACUUUAUUGCACUACUGUACUUUACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGAAAGCAGGAUGCACGCCAGAAUUUUGA

Get precursor sequence

Structure

        10          20        30           40        50         
UUCCUUUCCUACUUAUUA--     AA  A     C    U---|         A  GUACUU 
                    CUGCU  CG AUGCU UGAC    UUAUUGCACU CU      \
                    GACGA  GU UACGA ACUG    GAUAACGUGA GA      U
AGUUUUAAGACCGCACGUAG     AA  C     A    UUAU^         C  UCGACA 
120       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	1-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	2-	3-	3-	3-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	4-	5-	5-	5-	5-	5-	5-	5-	6-	6-	6-	6-	6-

Star sequence

Hsa-Mir-130-P2b_5p*

mirBase accession

MIMAT0022696

Sequence

0- GCUCUGACUUUAUUGCACUACU -22

Get sequence

Proposed targets

TargetScanVert: hsa-miR-301a-5p
TargetMiner: hsa-miR-301a-5p
miRDB: MIMAT0022696

Mature sequence

Hsa-Mir-130-P2b_3p

mirBase accession

MIMAT0000688

Sequence

37- CAGUGCAAUAGUAUUGUCAAAGCAU -62

Get sequence

Proposed targets

microrna.org: MIMAT0000688
TargetScanVert: hsa-miR-301a-3p
TargetMiner: hsa-miR-301a-3p
miRDB: MIMAT0000688