Mir-130-P2b

MirGeneDB ID

Hsa-Mir-130-P2b

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-301a

Paralogues

Hsa-Mir-130-P1c Hsa-Mir-130-P2a Hsa-Mir-130-P3b Hsa-Mir-130-P4a

Orthologues

Aca-Mir-130-P2b Ami-Mir-130-P2b Bta-Mir-130-P2b Cfa-Mir-130-P2b Cja-Mir-130-P2b Cli-Mir-130-P2b Cmi-Mir-130-P2b Cpi-Mir-130-P2b Cpo-Mir-130-P2b Dno-Mir-130-P2b Dre-Mir-130-P2b1 Eca-Mir-130-P2b Ete-Mir-130-P2b Gga-Mir-130-P2b Gja-Mir-130-P2b Gmo-Mir-130-P2b1 Laf-Mir-130-P2b Lch-Mir-130-P2b Loc-Mir-130-P2b Mal-Mir-130-P2b2 Mdo-Mir-130-P2b Mml-Mir-130-P2b Mmr-Mir-130-P2b Mmu-Mir-130-P2b Mun-Mir-130-P2b Oan-Mir-130-P2b Ocu-Mir-130-P2b Pab-Mir-130-P2b Pbv-Mir-130-P2b Rno-Mir-130-P2b Sha-Mir-130-P2b Spt-Mir-130-P2b Sto-Mir-130-P2b Tgu-Mir-130-P2b Xla-Mir-130-P2b3 Xla-Mir-130-P2b4 Xtr-Mir-130-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr17: 59151147-59151208 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-130-P2b)

Mir-130-P3b chr17: 59137785-59137849 [-] UCSC Ensembl
Mir-130-P2b chr17: 59151147-59151208 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCCUUUCCUACUUAUUACUGCUAACGAAUGCUCUGACUUUAUUGCACUACUGUACUUUACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGAAAGCAGGAUGCACGCCAGAAUUUUGA

Get precursor sequence

Structure

        10          20        30           40        50         
UUCCUUUCCUACUUAUUA--     AA  A     C    U---|         A  GUACUU 
                    CUGCU  CG AUGCU UGAC    UUAUUGCACU CU      \
                    GACGA  GU UACGA ACUG    GAUAACGUGA GA      U
AGUUUUAAGACCGCACGUAG     AA  C     A    UUAU^         C  UCGACA 
120       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-130-P2b_5p*

mirBase accession

MIMAT0022696

Sequence

0- GCUCUGACUUUAUUGCACUACU -22

Get sequence

Proposed targets

TargetScanVert: hsa-miR-301a-5p
TargetMiner: hsa-miR-301a-5p
miRDB: MIMAT0022696

Mature sequence

Hsa-Mir-130-P2b_3p

mirBase accession

MIMAT0000688

Sequence

37- CAGUGCAAUAGUAUUGUCAAAGCAU -62

Get sequence

Proposed targets

microrna.org: MIMAT0000688
TargetScanVert: hsa-miR-301a-3p
TargetMiner: hsa-miR-301a-3p
miRDB: MIMAT0000688