Mir-130-P2b2

MirGeneDB ID

Mal-Mir-130-P2b2

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-130-P1a1 Mal-Mir-130-P1a2 Mal-Mir-130-P2a1 Mal-Mir-130-P2a2 Mal-Mir-130-P3a1 Mal-Mir-130-P4a1

Orthologues

Aca-Mir-130-P2b Ami-Mir-130-P2b Bta-Mir-130-P2b Cfa-Mir-130-P2b Cli-Mir-130-P2b Cmi-Mir-130-P2b Cpi-Mir-130-P2b Cpo-Mir-130-P2b Dno-Mir-130-P2b Ete-Mir-130-P2b Gga-Mir-130-P2b Gja-Mir-130-P2b Hsa-Mir-130-P2b Lch-Mir-130-P2b Loc-Mir-130-P2b Mdo-Mir-130-P2b Mml-Mir-130-P2b Mmu-Mir-130-P2b Mun-Mir-130-P2b Oan-Mir-130-P2b Ocu-Mir-130-P2b Pbv-Mir-130-P2b Rno-Mir-130-P2b Sha-Mir-130-P2b Spt-Mir-130-P2b Sto-Mir-130-P2b Tgu-Mir-130-P2b Xtr-Mir-130-P2b

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884955.1: 1360290-1360351 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUACCAUACCUCUUUCAGCUGUUGACAGGUGCUCUGACUUCAUUGCACUACUGUAUCAGACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGAAAAUGGCAGGGAUAGCUGCAUUGACU

Get precursor sequence

Structure

        10          20        30        40           50         
UUACCAUACCUCUUUCA--      GA        C    UUC---|       A   UAUCA 
                   GCUGUU  CAGGUGCU UGAC      AUUGCACU CUG     \
                   CGGUAA  GUCUACGA ACUG      UAACGUGA GAU     G
UCAGUUACGUCGAUAGGGA      AA        A    UUAUGA^       C   CGACA 
120       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-130-P2b2_5p*

mirBase accession

None

Sequence

0- GCUCUGACUUCAUUGCACUACUGU -24

Get sequence

Mature sequence

Mal-Mir-130-P2b2_3p

mirBase accession

None

Sequence

37- CAGUGCAAUAGUAUUGUCAAAGCAU -62

Get sequence