MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-130-P2b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Horse (Equus caballus)
MiRBase ID eca-mir-301a
Paralogues Eca-Mir-130-P1c  Eca-Mir-130-P2a  Eca-Mir-130-P3b  Eca-Mir-130-P4a 
Orthologues Aca-Mir-130-P2b  Ami-Mir-130-P2b  Bta-Mir-130-P2b  Cfa-Mir-130-P2b  Cja-Mir-130-P2b  Cli-Mir-130-P2b  Cmi-Mir-130-P2b  Cpi-Mir-130-P2b  Cpo-Mir-130-P2b  Dno-Mir-130-P2b  Dre-Mir-130-P2b1  Ete-Mir-130-P2b  Gga-Mir-130-P2b  Gja-Mir-130-P2b  Gmo-Mir-130-P2b1  Hsa-Mir-130-P2b  Laf-Mir-130-P2b  Lch-Mir-130-P2b  Loc-Mir-130-P2b  Mal-Mir-130-P2b2  Mdo-Mir-130-P2b  Mml-Mir-130-P2b  Mmr-Mir-130-P2b  Mmu-Mir-130-P2b  Mun-Mir-130-P2b  Oan-Mir-130-P2b  Ocu-Mir-130-P2b  Pab-Mir-130-P2b  Pbv-Mir-130-P2b  Rno-Mir-130-P2b  Sha-Mir-130-P2b  Spt-Mir-130-P2b  Sto-Mir-130-P2b  Tgu-Mir-130-P2b  Xla-Mir-130-P2b3  Xla-Mir-130-P2b4  Xtr-Mir-130-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)
CM009158.1: 33590204-33590265 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2b)
Mir-130-P3b CM009158.1: 33581060-33581124 [-] UCSC Ensembl
Mir-130-P2b CM009158.1: 33590204-33590265 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCUUUCCUACCUAUUACUGCUAACGAAUGCUCUGACUUUAUUGCACUACUGUACUUUACAGCUAGCAGUGCAAUAGUAUUGUCAAAGCAUCUGAAAGCAGGAUGCACACCAGAAUGUUGA
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Structure
        10          20        30           40        50         
UUCCUUUCCUACCUAUUA--     AA  A     C    U---|         A  GUACUU 
                    CUGCU  CG AUGCU UGAC    UUAUUGCACU CU      \
                    GACGA  GU UACGA ACUG    GAUAACGUGA GA      U
AGUUGUAAGACCACACGUAG     AA  C     A    UUAU^         C  UCGACA 
120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-130-P2b_5p*

mirBase accessionNone
Sequence
0- GCUCUGACUUUAUUGCACUACU -22
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Mature sequence

Eca-Mir-130-P2b_3p

mirBase accessionMIMAT0013032
Sequence
37- CAGUGCAAUAGUAUUGUCAAAGCAU -62
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