MirGeneDB ID | Lch-Mir-130-P2b |
---|---|
Family name | MIR-130 (all species) |
Seed | AGUGCAA |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-130-P1a Lch-Mir-130-P1b Lch-Mir-130-P1c Lch-Mir-130-P1d Lch-Mir-130-P2a Lch-Mir-130-P2d Lch-Mir-130-P3a Lch-Mir-130-P3b Lch-Mir-130-P3c Lch-Mir-130-P4a |
Orthologues | Aca-Mir-130-P2b Ami-Mir-130-P2b Bta-Mir-130-P2b Cfa-Mir-130-P2b Cja-Mir-130-P2b Cli-Mir-130-P2b Cmi-Mir-130-P2b Cpi-Mir-130-P2b Cpo-Mir-130-P2b Dno-Mir-130-P2b Dre-Mir-130-P2b1 Eca-Mir-130-P2b Ete-Mir-130-P2b Gga-Mir-130-P2b Gja-Mir-130-P2b Gmo-Mir-130-P2b1 Hsa-Mir-130-P2b Laf-Mir-130-P2b Loc-Mir-130-P2b Mal-Mir-130-P2b2 Mdo-Mir-130-P2b Mml-Mir-130-P2b Mmr-Mir-130-P2b Mmu-Mir-130-P2b Mun-Mir-130-P2b Oan-Mir-130-P2b Ocu-Mir-130-P2b Pab-Mir-130-P2b Pbv-Mir-130-P2b Rno-Mir-130-P2b Sha-Mir-130-P2b Spt-Mir-130-P2b Sto-Mir-130-P2b Tgu-Mir-130-P2b Xla-Mir-130-P2b3 Xla-Mir-130-P2b4 Xtr-Mir-130-P2b |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Vertebrata |
Genome context (LatCha1_add) |
JH126567.1: 194120-194181 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | CAAUCUUAAGAAGUCUUGCUGCUGAUGGGUGCUCUGACUUUAUUGCACUACUGUGGUUUACAUCAAGCAGUGCAAUAGUAUUGUCAAAGCAUCUAAAAGCAGAUAGCACAACAAGGCCUUCAGet precursor sequence |
Structure | 10 20 30 40 50 CAAUCUUAAGAAGUCUUG-- GA C U---| A GUGGUU CUGCU UGGGUGCU UGAC UUAUUGCACU CU \ GACGA AUCUACGA ACUG GAUAACGUGA GA U ACUUCCGGAACAACACGAUA AA A UUAU^ C ACUACA 120 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Star sequence | Lch-Mir-130-P2b_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GCUCUGACUUUAUUGCACUACU -22
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Mature sequence | Lch-Mir-130-P2b_3p (predicted) |
mirBase accession | None |
Sequence |
37- CAGUGCAAUAGUAUUGUCAAAGCAU -62
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|