MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-130-P3c

Family name MIR-130 (all species)
Seed AGUGCAA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-130-P1a  Lch-Mir-130-P1b  Lch-Mir-130-P1c  Lch-Mir-130-P1d  Lch-Mir-130-P2a  Lch-Mir-130-P2b  Lch-Mir-130-P2d  Lch-Mir-130-P3a  Lch-Mir-130-P3b  Lch-Mir-130-P4a 
Orthologues Sto-Mir-130-P3c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH130223.1: 57514-57577 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUCCAAGGUUACCUGUCCUGUAGGCUGGCACCCUAUCAAUAUUGCCUCUGCUUACUUCAAAGUGUCAGUAGUGCAAUGUUGCUUAUAGGGUUUUGGAAUGCAGUGAGGCGUCCCAACCAGGUC
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Structure
        10          20        30           40        50        60
UGUCCAAGGUUACCUGUC--     GG UG C       ---|        CU     UACUUC 
                    CUGUA  C  G ACCCUAU   CAAUAUUGC  CUGCU      A
                    GACGU  G  U UGGGAUA   GUUGUAACG  GAUGA      A
CUGGACCAACCCUGCGGAGU     AA GU U       UUC^        U-     CUGUGA 
  120       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Lch-Mir-130-P3c_5p* (predicted)

mirBase accessionNone
Sequence
0- ACCCUAUCAAUAUUGCCUCUGCU -23
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Mature sequence

Lch-Mir-130-P3c_3p (predicted)

mirBase accessionNone
Sequence
39- UAGUGCAAUGUUGCUUAUAGGGUUU -64
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