MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-130-P2b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-301a
Paralogues Pbv-Mir-130-P1a  Pbv-Mir-130-P1b  Pbv-Mir-130-P1c  Pbv-Mir-130-P2a  Pbv-Mir-130-P3a  Pbv-Mir-130-P4a 
Orthologues Aca-Mir-130-P2b  Ami-Mir-130-P2b  Bta-Mir-130-P2b  Cfa-Mir-130-P2b  Cli-Mir-130-P2b  Cmi-Mir-130-P2b  Cpi-Mir-130-P2b  Cpo-Mir-130-P2b  Dno-Mir-130-P2b  Dre-Mir-130-P2b1  Ete-Mir-130-P2b  Gga-Mir-130-P2b  Gja-Mir-130-P2b  Gmo-Mir-130-P2b1  Hsa-Mir-130-P2b  Lch-Mir-130-P2b  Loc-Mir-130-P2b  Mal-Mir-130-P2b2  Mdo-Mir-130-P2b  Mml-Mir-130-P2b  Mmu-Mir-130-P2b  Mun-Mir-130-P2b  Oan-Mir-130-P2b  Ocu-Mir-130-P2b  Rno-Mir-130-P2b  Sha-Mir-130-P2b  Spt-Mir-130-P2b  Sto-Mir-130-P2b  Tgu-Mir-130-P2b  Xla-Mir-130-P2b3  Xla-Mir-130-P2b4  Xtr-Mir-130-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE959299.1: 49099-49160 [-]
Clustered miRNAs
(< 50kb from Mir-130-P2b)
Mir-130-P2b KE959299.1: 49099-49160 [-]
Mir-130-P1b KE959299.1: 49968-50030 [-]
Precursor
(pre-Mir +30nt flank)
CUUUCUUCAAGCAUUUUGCUGCUGACAAGUGCUCUGACUUCAUUGCACUACUGUACUUCCCAGCUAGCAGUGCAAUAGUAUUGUCAAAGCACUUGCGAGCAGAACCUGCAGCGAUGGCCCCG
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Structure
        10          20        30        40           50         
CUUUCUUCAAGCAUUUUG--     GA        C    UUC---|       A  GUACUU 
                    CUGCU  CAAGUGCU UGAC      AUUGCACU CU      \
                    GACGA  GUUCACGA ACUG      UAACGUGA GA      C
GCCCCGGUAGCGACGUCCAA     GC        A    UUAUGA^       C  UCGACC 
120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Pbv-Mir-130-P2b_5p*

mirBase accessionMIMAT0039038
Sequence
0- GCUCUGACUUCAUUGCACUACU -22
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Mature sequence

Pbv-Mir-130-P2b_3p

mirBase accessionMIMAT0039039
Sequence
37- CAGUGCAAUAGUAUUGUCAAAGCAC -62
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