| MirGeneDB ID | Spt-Mir-130-P1c |
|---|---|
| Family name | MIR-130 (all species) |
| Seed | AGUGCAA |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-130-P1a Spt-Mir-130-P1b Spt-Mir-130-P2a Spt-Mir-130-P2b Spt-Mir-130-P3a Spt-Mir-130-P4a |
| Orthologues | Aca-Mir-130-P1c Ami-Mir-130-P1c Bta-Mir-130-P1c Cfa-Mir-130-P1c Cja-Mir-130-P1c Cpi-Mir-130-P1c Cpo-Mir-130-P1c Dno-Mir-130-P1c Eca-Mir-130-P1c Ete-Mir-130-P1c Gja-Mir-130-P1c Hsa-Mir-130-P1c Laf-Mir-130-P1c Lch-Mir-130-P1c Mdo-Mir-130-P1c Mml-Mir-130-P1c Mmr-Mir-130-P1c Mmu-Mir-130-P1c Mun-Mir-130-P1c Neu-Mir-130-P1c Oan-Mir-130-P1c Ocu-Mir-130-P1c Pab-Mir-130-P1c Pbv-Mir-130-P1c Rno-Mir-130-P1c Sha-Mir-130-P1c Sto-Mir-130-P1c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01002436.1: 761678-761739 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GUGAUUCCCUGGGCCUGGCCCCUGUCCAGGGCUCUUUUCACAUUGUGCUACUGUCUGAGCCCAUCCCUAGCAGUGCAAUGUAAAAAGGGCAUUGGGCAGGUGGCCUCUGCAGCACUGAGCCCGet precursor sequence |
| Structure | 10 20 30 40 50 60 GUGAUUCCCUGGGCCUG- -| G C UG A GUCUGAG GCC CCUGUCCAG GCUCUUUU ACAUUG CU CU C CGG GGACGGGUU CGGGAAAA UGUAAC GA GA C CCCGAGUCACGACGUCUC U^ A A GU C UCCCUAC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Spt-Mir-130-P1c_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GCUCUUUUCACAUUGUGCUACU -22
Get sequence
|
| Mature sequence | Spt-Mir-130-P1c_3p (predicted) |
| mirBase accession | None |
| Sequence |
40- CAGUGCAAUGUAAAAAGGGCAU -62
Get sequence
|
