MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-130-P1c

Family name MIR-130 (all species)
Seed AGUGCAA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-130a
Paralogues Cpi-Mir-130-P1a  Cpi-Mir-130-P1b  Cpi-Mir-130-P2a  Cpi-Mir-130-P2b  Cpi-Mir-130-P3a  Cpi-Mir-130-P4a 
Orthologues Aca-Mir-130-P1c  Ami-Mir-130-P1c  Bta-Mir-130-P1c  Cfa-Mir-130-P1c  Cja-Mir-130-P1c  Cpo-Mir-130-P1c  Dno-Mir-130-P1c  Eca-Mir-130-P1c  Ete-Mir-130-P1c  Gja-Mir-130-P1c  Hsa-Mir-130-P1c  Laf-Mir-130-P1c  Lch-Mir-130-P1c  Mdo-Mir-130-P1c  Mml-Mir-130-P1c  Mmr-Mir-130-P1c  Mmu-Mir-130-P1c  Mun-Mir-130-P1c  Neu-Mir-130-P1c  Oan-Mir-130-P1c  Ocu-Mir-130-P1c  Pab-Mir-130-P1c  Pbv-Mir-130-P1c  Rno-Mir-130-P1c  Sha-Mir-130-P1c  Spt-Mir-130-P1c  Sto-Mir-130-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584650: 2173602-2173663 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCCCCACCACCACCACGCCGCCGUCCUGGGCUCUUUUCACAUUGUGCUACUGUCUGAGCCCCUGCCAAGCAGUGCAAUGUCAAAAGGGCAUCGGGCAGGCGGUGCCGGCAGCGCCUGGCCC
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Structure
        10         20        30         40        50        60
AUCCCCACCACCACCAC-      GU     -|       C      UG  A  GUCUGAG 
                  GCCGCC  CCUGG GCUCUUUU ACAUUG  CU CU       C
                  UGGCGG  GGGCU CGGGAAAA UGUAAC  GA GA       C
CCCGGUCCGCGACGGCCG      AC     A^       C      GU  C  ACCGUCC 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Star sequence

Cpi-Mir-130-P1c_5p*
mirBase accessionMIMAT0037741
Sequence 
0- GCUCUUUUCACAUUGUGCUACU -22
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Mature sequence

Cpi-Mir-130-P1c_3p
mirBase accessionMIMAT0037742
Sequence 
40- CAGUGCAAUGUCAAAAGGGCAU -62
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