MirGeneDB 3.0

MirGeneDB ID

Aca-Mir-130-P4a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-130b
Paralogues Aca-Mir-130-P1a  Aca-Mir-130-P1b  Aca-Mir-130-P1c  Aca-Mir-130-P2a  Aca-Mir-130-P2b  Aca-Mir-130-P3a 
Orthologues Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Gja-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)
GL343282.1: 1188362-1188424 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P4a)
Mir-130-P4a GL343282.1: 1188362-1188424 [-] UCSC Ensembl
Mir-130-P3a GL343282.1: 1189904-1189968 [-] UCSC Ensembl
Mir-130-P2a GL343282.1: 1200201-1200263 [-] UCSC Ensembl
Mir-130-P1a GL343282.1: 1201646-1201704 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGGAAAGCGUGCUACGGGGCGUCUGCCCACUCUUUCCCCUGUUGCACUACUGUCCAACGUCACAGCUAGCAGUGCAAUAAUGAAAGGGCGUCAGCCGCUCCGCAGAGCAGCAGAACCGGAG
Get precursor sequence
Structure
        10           20        30        40        50        60 
GCAGGAAAGCGUGCUAC---|     U   CCCA       CCC         A  GUCCAAC 
                    GGGGCG CUG    CUCUUUC   UGUUGCACU CU       G
                    CCUCGC GAC    GGGAAAG   AUAACGUGA GA       U
GAGGCCAAGACGACGAGACG^     C   UGC-       UA-         C  UCGACAC 
 120       110       100         90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sk Ta Ta To Wh
Star sequence

Aca-Mir-130-P4a_5p*

mirBase accessionMIMAT0021742
Sequence
0- ACUCUUUCCCCUGUUGCACUACU -23
Get sequence
Mature sequence

Aca-Mir-130-P4a_3p

mirBase accessionMIMAT0021743
Sequence
41- CAGUGCAAUAAUGAAAGGGCGU -63
Get sequence