MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-130-P4a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-130-P1a  Gja-Mir-130-P1b  Gja-Mir-130-P1c  Gja-Mir-130-P2a  Gja-Mir-130-P2b  Gja-Mir-130-P3a 
Orthologues Aca-Mir-130-P4a  Bta-Mir-130-P4a  Cfa-Mir-130-P4a  Cja-Mir-130-P4a  Cmi-Mir-130-P4a  Cpi-Mir-130-P4a  Cpo-Mir-130-P4a  Dno-Mir-130-P4a  Dre-Mir-130-P4a1  Eca-Mir-130-P4a  Ete-Mir-130-P4a  Gga-Mir-130-P4a  Hsa-Mir-130-P4a  Laf-Mir-130-P4a  Lch-Mir-130-P4a  Loc-Mir-130-P4a  Mal-Mir-130-P4a1  Mdo-Mir-130-P4a  Mml-Mir-130-P4a  Mmr-Mir-130-P4a  Mmu-Mir-130-P4a  Mun-Mir-130-P4a  Ocu-Mir-130-P4a  Pab-Mir-130-P4a  Pbv-Mir-130-P4a  Rno-Mir-130-P4a  Sha-Mir-130-P4a  Spt-Mir-130-P4a  Sto-Mir-130-P4a  Tgu-Mir-130-P4a  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4  Xtr-Mir-130-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015164679.1: 168764-168825 [+]
Precursor
(pre-Mir +30nt flank)
AUGACAAGUUUUGCUACGGGGAAGUCUGCUACUCUUUCUCUGUUGCACUACUGUCAAACGUUGCAGCUAGCAGUGCAAUAAUGAAAGGGCGUCAGCCACCCCGGAGAGCAGCCGGAGAAGGC
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Structure
        10           20        30        40        50        60
AUGACAAGUUUUGCUAC---|   AA U   CUA       UC         A  GUCAAAC 
                    GGGG  G CUG   CUCUUUC  UGUUGCACU CU       G
                    CCCC  C GAC   GGGAAAG  AUAACGUGA GA       U
CGGAAGAGGCCGACGAGAGG^   AC -   UGC       UA         C  UCGACGU 
120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gja-Mir-130-P4a_5p*
mirBase accessionNone
Sequence 
0- ACUCUUUCUCUGUUGCACUACU -22
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Mature sequence

Gja-Mir-130-P4a_3p
mirBase accessionNone
Sequence 
40- CAGUGCAAUAAUGAAAGGGCGU -62
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