MirGeneDB ID | Sto-Mir-130-P3a |
Family name |
MIR-130 (all species) |
Seed |
AGUGCAA |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-130-P1a
Sto-Mir-130-P1b
Sto-Mir-130-P1c
Sto-Mir-130-P2a
Sto-Mir-130-P2b
Sto-Mir-130-P3b
Sto-Mir-130-P3c
Sto-Mir-130-P4a
|
Orthologues |
Aca-Mir-130-P3a
Ami-Mir-130-P3a
Cli-Mir-130-P3a
Cmi-Mir-130-P3a
Cpi-Mir-130-P3a
Dre-Mir-130-P3a1
Gga-Mir-130-P3a
Gja-Mir-130-P3a
Lch-Mir-130-P3a
Loc-Mir-130-P3a
Mal-Mir-130-P3a1
Mun-Mir-130-P3a
Pbv-Mir-130-P3a
Spt-Mir-130-P3a
Tgu-Mir-130-P3a
Xla-Mir-130-P3a3
Xla-Mir-130-P3a4
Xtr-Mir-130-P3a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_003427355_STO_add) |
BFAA01012481.1: 68285-68351 [+]
|
Precursor (pre-Mir +30nt flank) |
UGCUGAGGCGAGGCUACCCUUGGAGCUGGGACCCUAUCUAUAUUGCGUCUGCUUUGAAUUUAUCGCUUUAAGUAGUGCAAUAUCGCUUAUAGGGUUUCAGCCCGGGGUCCAAUCGUCUUUCAAGAGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGCUGAGGCGAGGCUAC--- A GG CU---| U UUGAAUUU
CCUUGG GCUG ACCCUAU AUAUUGCG CUGCU \
GGGGCC CGAC UGGGAUA UAUAACGU GAUGA A
GGAGAACUUUCUGCUAACCU - UU UUCGC^ - AUUUCGCU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Sto-Mir-130-P3a_5p* |
mirBase accession | None |
Sequence |
0- ACCCUAUCUAUAUUGCGUCUGCU -23
Get sequence
|
Mature sequence |
Sto-Mir-130-P3a_3p |
mirBase accession | None |
Sequence |
42- UAGUGCAAUAUCGCUUAUAGGGUUU -67
Get sequence
|