MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-130-P3a

Family name MIR-130 (all species)
Seed AGUGCAA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-454
Paralogues Ami-Mir-130-P1a  Ami-Mir-130-P1b  Ami-Mir-130-P1c  Ami-Mir-130-P2a  Ami-Mir-130-P2b 
Orthologues Aca-Mir-130-P3a  Cli-Mir-130-P3a  Cmi-Mir-130-P3a  Cpi-Mir-130-P3a  Dre-Mir-130-P3a1  Gga-Mir-130-P3a  Gja-Mir-130-P3a  Lch-Mir-130-P3a  Loc-Mir-130-P3a  Mal-Mir-130-P3a1  Mun-Mir-130-P3a  Pbv-Mir-130-P3a  Spt-Mir-130-P3a  Sto-Mir-130-P3a  Tgu-Mir-130-P3a  Xla-Mir-130-P3a3  Xla-Mir-130-P3a4  Xtr-Mir-130-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017709599.1: 17735-17798 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-130-P3a)		 Mir-130-P3a NW_017709599.1: 17735-17798 [-] UCSC
Mir-130-P2a NW_017709599.1: 24537-24597 [-] UCSC
Mir-130-P1a NW_017709599.1: 25792-25850 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AUAAUCCAGCUUCAUAACCUUAAGGAUAAGACCCUAUCAAUAUUGCCUCUGCUUUUGUGAUCAGGGUAGUAGUGCAAUAUUGCUUAUAGGGUCUUUUCUUUGGAGGGUAUUCUUCAUGGAGAGA
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Structure
        10         20         30           40        50        60
AUAAUCCAGCUUCAUAA-   -      U          ---|        CU     UUUGUG 
                  CCU UAAGGA AAGACCCUAU   CAAUAUUGC  CUGCU      A
                  GGA GUUUCU UUCUGGGAUA   GUUAUAACG  GAUGA      U
AGAGAGGUACUUCUUAUG   G      U          UUC^        U-     UGGGAC 
  120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-130-P3a_5p*
mirBase accessionMIMAT0038285
Sequence 
0- ACCCUAUCAAUAUUGCCUCUGCU -23
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Mature sequence

Ami-Mir-130-P3a_3p
mirBase accessionMIMAT0038286
Sequence 
39- UAGUGCAAUAUUGCUUAUAGGGUCU -64
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