MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-130-P3a1

Family name MIR-130 (all species)
Seed AGUGCAA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-454b
Paralogues Dre-Mir-130-P1a1  Dre-Mir-130-P1a2  Dre-Mir-130-P1b1  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Dre-Mir-130-P2b1  Dre-Mir-130-P3b1  Dre-Mir-130-P4a1 
Orthologues Aca-Mir-130-P3a  Ami-Mir-130-P3a  Cli-Mir-130-P3a  Cmi-Mir-130-P3a  Cpi-Mir-130-P3a  Gga-Mir-130-P3a  Gja-Mir-130-P3a  Lch-Mir-130-P3a  Loc-Mir-130-P3a  Mal-Mir-130-P3a1  Mun-Mir-130-P3a  Pbv-Mir-130-P3a  Spt-Mir-130-P3a  Sto-Mir-130-P3a  Tgu-Mir-130-P3a  Xtr-Mir-130-P3a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr5: 13296331-13296395 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P3a1)		 Mir-130-P1a1 chr5: 13288840-13288898 [+] UCSC Ensembl
Mir-130-P2a1 chr5: 13289363-13289425 [+] UCSC Ensembl
Mir-130-P3a1 chr5: 13296331-13296395 [+] UCSC Ensembl
Mir-130-P4a1 chr5: 13299343-13299404 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUCAUGAUAAAUGCAUCUUGCAGGCGAGACCCUAUCAAUAUUGCCUCUGCUUUUCUCACUGUUUAUGGAGUAGUGCAAUAUUGCUUAUAGGGUCUUGACUUUAAGGCUAAUCUGCAAUAUCAGC
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Structure
        10          20        30           40        50        60 
UAUCAUGAUAAAUGCAU--    C  G           ---|        CU     UUUCUCAC 
                   CUUG AG CGAGACCCUAU   CAAUAUUGC  CUGCU        \
                   GAAU UC GUUCUGGGAUA   GUUAUAACG  GAUGA        U
CGACUAUAACGUCUAAUCG    U  A           UUC^        U-     GGUAUUUG 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-130-P3a1_5p*
mirBase accessionNone
Sequence 
0- CCCUAUCAAUAUUGCCUCUGCU -22
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Mature sequence

Dre-Mir-130-P3a1_3p
mirBase accessionMIMAT0001878
Sequence 
41- UAGUGCAAUAUUGCUUAUAGGGUC -65
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Proposed targets TargetScanFish: dre-miR-454b