MirGeneDB 3.0

MirGeneDB ID

Dre-Mir-130-P1b1

Family name MIR-130 (all species)
Seed AGUGCAA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-130a
Paralogues Dre-Mir-130-P1a1  Dre-Mir-130-P1a2  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Dre-Mir-130-P2b1  Dre-Mir-130-P3a1  Dre-Mir-130-P3b1  Dre-Mir-130-P4a1 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xtr-Mir-130-P1b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr10: 33377140-33377202 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1b1)
Mir-130-P3b1 chr10: 33376841-33376905 [-] UCSC Ensembl
Mir-130-P2b1 chr10: 33377012-33377073 [-] UCSC Ensembl
Mir-130-P1b1 chr10: 33377140-33377202 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCACCCUGAUUGUGUACUGUCUGUCCAGUGCCCCUUUUAUAUUGUACUACUGAUAACCCAGUUAUUAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGGGAUUUUUCUCAAAGGUAGGGUC
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Structure
        10        20          30        40        50        60 
AGCACCCUGAUUGUGUACUG--|   U         C   U          A  GAUAACCC 
                      UCUG CCAGUGCCC UUU AUAUUGUACU CU        \
                      GGAC GGUUACGGG AAA UGUAACGUGA GA        A
CUGGGAUGGAAACUCUUUUUAG^   C         A   U          C  AAUUAUUG 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-130-P1b1_5p*

mirBase accessionNone
Sequence
0- GCCCCUUUUAUAUUGUACUACU -22
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Mature sequence

Dre-Mir-130-P1b1_3p

mirBase accessionMIMAT0001826
Sequence
41- CAGUGCAAUGUUAAAAGGGCAU -63
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Proposed targets TargetScanFish: dre-miR-130a