MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-130-P1b

Family name MIR-130 (all species)
Seed AGUGCAA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-130c
Paralogues Tgu-Mir-130-P1a  Tgu-Mir-130-P2a  Tgu-Mir-130-P2b  Tgu-Mir-130-P3a  Tgu-Mir-130-P4a 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Dre-Mir-130-P1b1  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xtr-Mir-130-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
19: 2690538-2690600 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1b)
Mir-130-P1b 19: 2690538-2690600 [+] UCSC Ensembl
Mir-130-P2b 19: 2691535-2691596 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCUCUGUCCCUGAGUGGUGUCUGUCCAGUGCCCUUUUUAUGUUGUACUACUGGUGAUGAUGCACAAAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGCAAUACAAUCUGCAUUGUUCUGU
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Structure
        10           20        30        40        50        60 
UCCUCUGUCCCUGAGUGG---| U   U             U          A  GGUGAUGA 
                     UG CUG CCAGUGCCCUUUU AUGUUGUACU CU        \
                     AC GAC GGUUACGGGAAAA UGUAACGUGA GA        U
UGUCUUGUUACGUCUAACAUA^ -   C             U          C  AAAACACG 
 120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-130-P1b_5p*

mirBase accessionMIMAT0027012
Sequence
0- GCCCUUUUUAUGUUGUACUACU -22
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Mature sequence

Tgu-Mir-130-P1b_3p

mirBase accessionMIMAT0014581
Sequence
41- CAGUGCAAUGUUAAAAGGGCAU -63
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