MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-130-P1b4

Family name MIR-130 (all species)
Seed AGUGCAA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-130-P1a3  Xla-Mir-130-P1a4  Xla-Mir-130-P1b3  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xla-Mir-130-P2b3  Xla-Mir-130-P2b4  Xla-Mir-130-P3a3  Xla-Mir-130-P3a4  Xla-Mir-130-P4a3  Xla-Mir-130-P4a4 
Orthologues Aca-Mir-130-P1b  Ami-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xtr-Mir-130-P1b 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030727.1: 78407994-78408057 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUAAACCAAUUGUAUGAGCCUGUCCAGUGCCCUUUUUAUGUUGUUCUACUAGUGGUCACACACACAAAAGCAGUGCAAUGUUAAAAAGGCAUUGGCCAGGGCCACUGGCCACAUUCUGACUG
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Structure
        10        20          30        40        50        60 
AUAUAAACCAAUUGUAUGAG--|   U        C    U       U  A  AGUGGUCA 
                      CCUG CCAGUGCC UUUU AUGUUGU CU CU        C
                      GGAC GGUUACGG AAAA UGUAACG GA GA        A
GUCAGUCUUACACCGGUCACCG^   C        A    U       U  C  AAACACAC 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Em
Star sequence

Xla-Mir-130-P1b4_5p*
mirBase accessionNone
Sequence 
0- GCCCUUUUUAUGUUGUUCUACU -22
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Mature sequence

Xla-Mir-130-P1b4_3p
mirBase accessionNone
Sequence 
42- CAGUGCAAUGUUAAAAAGGCAU -64
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