Mir-130-P2a

MirGeneDB ID

Sto-Mir-130-P2a

Family name

MIR-130 (all species)

Seed

AGUGCAA

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-130-P1a Sto-Mir-130-P1b Sto-Mir-130-P1c Sto-Mir-130-P2b Sto-Mir-130-P3a Sto-Mir-130-P3b Sto-Mir-130-P3c Sto-Mir-130-P4a

Orthologues

Aca-Mir-130-P2a Ami-Mir-130-P2a Bta-Mir-130-P2a Cfa-Mir-130-P2a Cja-Mir-130-P2a Cli-Mir-130-P2a Cmi-Mir-130-P2a Cpi-Mir-130-P2a Cpo-Mir-130-P2a Dno-Mir-130-P2a Dre-Mir-130-P2a1 Dre-Mir-130-P2a2 Eca-Mir-130-P2a Gga-Mir-130-P2a Gja-Mir-130-P2a Gmo-Mir-130-P2a1 Gmo-Mir-130-P2a2 Hsa-Mir-130-P2a Laf-Mir-130-P2a Lch-Mir-130-P2a Loc-Mir-130-P2a Mal-Mir-130-P2a1 Mal-Mir-130-P2a2 Mml-Mir-130-P2a Mmr-Mir-130-P2a Mmu-Mir-130-P2a Mun-Mir-130-P2a Oan-Mir-130-P2a Ocu-Mir-130-P2a Pab-Mir-130-P2a Pbv-Mir-130-P2a Rno-Mir-130-P2a Spt-Mir-130-P2a Tgu-Mir-130-P2a Tni-Mir-130-P2a2 Xla-Mir-130-P2a3 Xla-Mir-130-P2a4 Xtr-Mir-130-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01012481.1: 61702-61763 [+]

Precursor
(pre-Mir +30nt flank)

GCCCUGGGUCAGGGUUGACUGCUGUCGGAGGCUCUGACGAUAUUGCACUACUGUACUCACAGUUAAGCAGUGCAAUAGUAUUGUCAAAGCGUCAGGCACCAGAGAGCGAGCUCCCGUCGACA

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Structure

        10          20        30        40           50         
GCCCUGGGUCAGGGUUGA--   C    G  G   C         ---|     A  GUACUC 
                    CUG UGUC GA GCU UGACGAUAU   UGCACU CU      \
                    GAC ACGG CU CGA ACUGUUAUG   ACGUGA GA      A
ACAGCUGCCCUCGAGCGAGA   C    A  G   A         AUA^     C  AUUGAC 
120       110       100        90        80        70        60

Deep sequencing

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Comment

There is a second Drosha cut +2 on the 5p arm.

3' NTU

Motifs

Tissue expression

To

Star sequence

Sto-Mir-130-P2a_5p*

mirBase accession

None

Sequence

0- GCUCUGACGAUAUUGCACUACU -22

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Mature sequence

Sto-Mir-130-P2a_3p

mirBase accession

None

Sequence

37- CAGUGCAAUAGUAUUGUCAAAGCGU -62

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