MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-130-P2a

Family name MIR-130 (all species)
Seed AGUGCAA
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-301b
Paralogues Mmu-Mir-130-P1c  Mmu-Mir-130-P2b  Mmu-Mir-130-P4a 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xtr-Mir-130-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mm10)
chr16: 17124418-17124477 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2a)
Mir-130-P4a chr16: 17124071-17124130 [-] UCSC Ensembl
Mir-130-P2a chr16: 17124418-17124477 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGGCGAUGGAUUUCCUGCUGGCUGCGGGUGCUCUGACUAGGUUGCACUACUGUGCUGUGAGAAGCAGUGCAAUGGUAUUGUCAAAGCAUCUGGGACCAGCCUCGAAGACCACCUCACCU
Get precursor sequence
Structure
        10          20         30        40           50        
AGGGCGAUGGAUUUCCU--     -  G        C    UAG---|       A  GUGCU 
                   GCUGG CU CGGGUGCU UGAC      GUUGCACU CU     \
                   CGACC GG GUCUACGA ACUG      UAACGUGA GA     G
UCCACUCCACCAGAAGCUC     A  -        A    UUAUGG^       C  AGAGU 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
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Star sequence

Mmu-Mir-130-P2a_5p*

mirBase accessionMIMAT0017232
Sequence
0- GCUCUGACUAGGUUGCACUACU -22
Get sequence
Proposed targets TargetScanVert: mmu-miR-301b-5p
miRDB: MIMAT0017232
Mature sequence

Mmu-Mir-130-P2a_3p

mirBase accessionMIMAT0004186
Sequence
35- CAGUGCAAUGGUAUUGUCAAAGCAU -60
Get sequence
Proposed targets microrna.org: MIMAT0004186
TargetScanVert: mmu-miR-301b-3p
miRDB: MIMAT0004186