MirGeneDB ID | Mun-Mir-130-P2a |
Family name |
MIR-130 (all species) |
Seed |
AGUGCAA |
Species |
Microcaecilia (Microcaecilia unicolor) |
MiRBase ID |
|
Paralogues |
Mun-Mir-130-P1a
Mun-Mir-130-P1b
Mun-Mir-130-P1c
Mun-Mir-130-P2b
Mun-Mir-130-P3a
Mun-Mir-130-P4a
|
Orthologues |
Aca-Mir-130-P2a
Ami-Mir-130-P2a
Bta-Mir-130-P2a
Cfa-Mir-130-P2a
Cja-Mir-130-P2a
Cli-Mir-130-P2a
Cmi-Mir-130-P2a
Cpi-Mir-130-P2a
Cpo-Mir-130-P2a
Dno-Mir-130-P2a
Dre-Mir-130-P2a1
Dre-Mir-130-P2a2
Eca-Mir-130-P2a
Gga-Mir-130-P2a
Gja-Mir-130-P2a
Gmo-Mir-130-P2a1
Gmo-Mir-130-P2a2
Hsa-Mir-130-P2a
Laf-Mir-130-P2a
Lch-Mir-130-P2a
Loc-Mir-130-P2a
Mal-Mir-130-P2a1
Mal-Mir-130-P2a2
Mml-Mir-130-P2a
Mmr-Mir-130-P2a
Mmu-Mir-130-P2a
Oan-Mir-130-P2a
Ocu-Mir-130-P2a
Pab-Mir-130-P2a
Pbv-Mir-130-P2a
Rno-Mir-130-P2a
Spt-Mir-130-P2a
Sto-Mir-130-P2a
Tgu-Mir-130-P2a
Tni-Mir-130-P2a2
Xla-Mir-130-P2a3
Xla-Mir-130-P2a4
Xtr-Mir-130-P2a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (Mun_miRNA_loci) |
130-P2a_LR594642.1:57446976-57447234: 101-159 [+]
|
Precursor (pre-Mir +30nt flank) |
AGUGUGACAGUGCUGGCUGGUGUCAGUUGCUCUGACAGUGUUGCACUACUGUUUGCACCAAAGAAGCAGUGCAAUAAUAUUGUCAAAGCAUUUGGUUCCAGUUCUAACACACCCUUGUG
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUGUGACAGUGCUGGC-- UG U C ---| A GUUUGC
UGG UCAG UGCU UGACAGUGU UGCACU CU A
ACC GGUU ACGA ACUGUUAUA ACGUGA GA C
GUGUUCCCACACAAUCUUG UU U A AUA^ C AGAAAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Mun-Mir-130-P2a_5p* |
mirBase accession | None |
Sequence |
0- UCUGACAGUGUUGCACUACU -20
Get sequence
|
Mature sequence |
Mun-Mir-130-P2a_3p |
mirBase accession | None |
Sequence |
36- CAGUGCAAUAAUAUUGUCAAAGC -59
Get sequence
|