MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-130-P2a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-301b
Paralogues Ocu-Mir-130-P1c  Ocu-Mir-130-P2b  Ocu-Mir-130-P4a 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cja-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Eca-Mir-130-P2a  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Laf-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmr-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Pab-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xtr-Mir-130-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)
chr21: 5522622-5522681 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2a)
Mir-130-P2a chr21: 5522622-5522681 [+] UCSC Ensembl
Mir-130-P4a chr21: 5522961-5523020 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCUUGGUGUCCCCGCUGCUGGCUGCAGGUGCUCUGACGAGGUUGCACUACUGUGCUCUAAGAAGCAGUGCAAUGAUAUUGUCAAAGCAUCUGGGACUAGCCUUGGGGACCCCCCUCCCC
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Structure
        10          20         30        40           50        
ACCUUGGUGUCCCCGCU--     -  G        C      G---|       A  GUGCU 
                   GCUGG CU CAGGUGCU UGACGA    GUUGCACU CU     \
                   CGAUC GG GUCUACGA ACUGUU    UAACGUGA GA     C
CCCCUCCCCCCAGGGGUUC     A  -        A      AUAG^       C  AGAAU 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-130-P2a_5p*

mirBase accessionMIMAT0048366
Sequence
0- GCUCUGACGAGGUUGCACUACU -22
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Mature sequence

Ocu-Mir-130-P2a_3p

mirBase accessionMIMAT0048367
Sequence
35- CAGUGCAAUGAUAUUGUCAAAGCAU -60
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