MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-130-P2a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-301-2
Paralogues Xtr-Mir-130-P1a  Xtr-Mir-130-P1b  Xtr-Mir-130-P2b  Xtr-Mir-130-P3a  Xtr-Mir-130-P4a 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cja-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Eca-Mir-130-P2a  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Laf-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmr-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pab-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr1: 145402713-145402775 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2a)
Mir-130-P4a chr1: 145394714-145394773 [-] UCSC Ensembl
Mir-130-P2a chr1: 145402713-145402775 [-] UCSC Ensembl
Mir-130-P1a chr1: 145403558-145403616 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUGGGGGUGAUAGUAAGCUUGUGUGAAUUGCUCUGACAGUGUUGCACUACUGUGAUCUCAAAUGAAGCAGUGCAAUAGUAUUGUCAAAGCAUUUCAUUCCAGCACAACUUCAGCUUUGUGCA
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Structure
        10          20        30        40           50         
AUUGGGGGUGAUAGUAA--   UGU     U    C       ---|       A  GUGAUC 
                   GCU   GUGAA UGCU UGACAGU   GUUGCACU CU      U
                   CGA   UACUU ACGA ACUGUUA   UAACGUGA GA      C
ACGUGUUUCGACUUCAACA   CCU     U    A       UGA^       C  AGUAAA 
 120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
An Br Em Em He Ve
Star sequence

Xtr-Mir-130-P2a_5p*

mirBase accessionNone
Sequence
0- GCUCUGACAGUGUUGCACUACU -22
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Mature sequence

Xtr-Mir-130-P2a_3p

mirBase accessionMIMAT0003635
Sequence
38- CAGUGCAAUAGUAUUGUCAAAGCAU -63
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Proposed targets TargetScanVert: xtr-miR-301