MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-130-P2a

Family name MIR-130 (all species)
Seed CUAUGAC
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-130-P1a  Loc-Mir-130-P1b  Loc-Mir-130-P2b  Loc-Mir-130-P3a  Loc-Mir-130-P4a 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cja-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Eca-Mir-130-P2a  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Laf-Mir-130-P2a  Lch-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmr-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pab-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xtr-Mir-130-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG20: 1568905-1568967 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGGGUUUUCCGAGUUAUGCUGUGGCCAUUUGCUAUGACAAUGUUGCACUACUGUACUACUCACUCAAGCAGUGCAAUAGUAUUGUCAUAGCAUGCGGUCUCCGCGGACACGCACGACACCGGG
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Structure
        10          20        30        40           50         
GGGGUUUUCCGAGUUAU--  UGU    AUU            ---|       A  GUACUA 
                   GC   GGCC   UGCUAUGACAAU   GUUGCACU CU      C
                   CG   CUGG   ACGAUACUGUUA   UAACGUGA GA      U
GGGCCACAGCACGCACAGG  CCU    CGU            UGA^       C  ACUCAC 
 120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-130-P2a_5p
mirBase accessionNone
Sequence 
0- GCUAUGACAAUGUUGCACUACU -22
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Star sequence

Loc-Mir-130-P2a_3p*
mirBase accessionNone
Sequence 
38- CAGUGCAAUAGUAUUGUCAUAGCAU -63
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