MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-130-P2a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-301b
Paralogues Cfa-Mir-130-P1c  Cfa-Mir-130-P2b  Cfa-Mir-130-P3b  Cfa-Mir-130-P4a 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cja-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Eca-Mir-130-P2a  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Laf-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmr-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pab-Mir-130-P2a  Pbv-Mir-130-P2a  Rno-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xtr-Mir-130-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)		 chr26: 30924110-30924169 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2a)		 Mir-130-P2a chr26: 30924110-30924169 [+] UCSC Ensembl
Mir-130-P4a chr26: 30924432-30924491 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCGCGGAGUCCCCCCUGCUGGCCCCAGGUGCUCUGACGAGGUUGCACUACUGUGCUCUGAGAAGCAGUGCAAUGAUAUUGUCAAAGCAUCGGGGACCAGCCUUGGGGACGCCCCCCAUC
Get precursor sequence
Structure
        10          20         30        40           50        
GCCGCGGAGUCCCCCCU--     -    A      C      G---|       A  GUGCU 
                   GCUGG CCCC GGUGCU UGACGA    GUUGCACU CU     \
                   CGACC GGGG CUACGA ACUGUU    UAACGUGA GA     C
CUACCCCCCGCAGGGGUUC     A    -      A      AUAG^       C  AGAGU 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-130-P2a_5p*
mirBase accessionNone
Sequence 
0- GCUCUGACGAGGUUGCACUACU -22
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Mature sequence

Cfa-Mir-130-P2a_3p
mirBase accessionMIMAT0009854
Sequence 
35- CAGUGCAAUGAUAUUGUCAAAGCAU -60
Get sequence
Proposed targets TargetScanVert: cfa-miR-301b
miRDB: MIMAT0009854