MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-130-P2a

Family name MIR-130 (all species)
Seed AGUGCAA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-301b
Paralogues Rno-Mir-130-P1c  Rno-Mir-130-P2b  Rno-Mir-130-P4a 
Orthologues Aca-Mir-130-P2a  Ami-Mir-130-P2a  Bta-Mir-130-P2a  Cfa-Mir-130-P2a  Cja-Mir-130-P2a  Cli-Mir-130-P2a  Cmi-Mir-130-P2a  Cpi-Mir-130-P2a  Cpo-Mir-130-P2a  Dno-Mir-130-P2a  Dre-Mir-130-P2a1  Dre-Mir-130-P2a2  Eca-Mir-130-P2a  Gga-Mir-130-P2a  Gja-Mir-130-P2a  Gmo-Mir-130-P2a1  Gmo-Mir-130-P2a2  Hsa-Mir-130-P2a  Laf-Mir-130-P2a  Lch-Mir-130-P2a  Loc-Mir-130-P2a  Mal-Mir-130-P2a1  Mal-Mir-130-P2a2  Mml-Mir-130-P2a  Mmr-Mir-130-P2a  Mmu-Mir-130-P2a  Mun-Mir-130-P2a  Oan-Mir-130-P2a  Ocu-Mir-130-P2a  Pab-Mir-130-P2a  Pbv-Mir-130-P2a  Spt-Mir-130-P2a  Sto-Mir-130-P2a  Tgu-Mir-130-P2a  Tni-Mir-130-P2a2  Xla-Mir-130-P2a3  Xla-Mir-130-P2a4  Xtr-Mir-130-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr11: 88129435-88129494 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P2a)		 Mir-130-P2a chr11: 88129435-88129494 [+] UCSC Ensembl
Mir-130-P4a chr11: 88129785-88129844 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGGCGAUGGAUUCCCUGCUGGCUGCGGGUGCUCUGACUAGGUUGCACUACUGUGCUGUGGAAAGCAGUGCAAUGGUAUUGUCAAAGCAUCUGGGACCAGUCUCACAGACUACCUCACCU
Get precursor sequence
Structure
        10          20         30        40           50        
AGGGCGAUGGAUUCCCU--     -  G        C    UAG---|       A  GUGCU 
                   GCUGG CU CGGGUGCU UGAC      GUUGCACU CU     \
                   UGACC GG GUCUACGA ACUG      UAACGUGA GA     G
UCCACUCCAUCAGACACUC     A  -        A    UUAUGG^       C  AAGGU 
.       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
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Star sequence

Rno-Mir-130-P2a_5p*
mirBase accessionMIMAT0017300
Sequence 
0- GCUCUGACUAGGUUGCACUACU -22
Get sequence
Proposed targets TargetScanVert: rno-miR-301b-5p
miRDB: MIMAT0017300
Mature sequence

Rno-Mir-130-P2a_3p
mirBase accessionMIMAT0005304
Sequence 
35- CAGUGCAAUGGUAUUGUCAAAGCAU -60
Get sequence
Proposed targets microrna.org: MIMAT0005304
TargetScanVert: rno-miR-301b-3p
miRDB: MIMAT0005304