| MirGeneDB ID | Gmo-Mir-130-P2a1 |
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| Family name |
MIR-130 (all species) |
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| Seed |
AGUGCAA |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-301c
|
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| Paralogues |
Gmo-Mir-130-P1a1
Gmo-Mir-130-P1a2
Gmo-Mir-130-P2a2
Gmo-Mir-130-P2b1
Gmo-Mir-130-P3b1
|
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| Orthologues |
Aca-Mir-130-P2a
Ami-Mir-130-P2a
Bta-Mir-130-P2a
Cfa-Mir-130-P2a
Cli-Mir-130-P2a
Cmi-Mir-130-P2a
Cpi-Mir-130-P2a
Cpo-Mir-130-P2a
Dno-Mir-130-P2a
Dre-Mir-130-P2a1
Gga-Mir-130-P2a
Gja-Mir-130-P2a
Hsa-Mir-130-P2a
Lch-Mir-130-P2a
Loc-Mir-130-P2a
Mal-Mir-130-P2a1
Mml-Mir-130-P2a
Mmu-Mir-130-P2a
Mun-Mir-130-P2a
Oan-Mir-130-P2a
Ocu-Mir-130-P2a
Pbv-Mir-130-P2a
Rno-Mir-130-P2a
Spt-Mir-130-P2a
Sto-Mir-130-P2a
Tgu-Mir-130-P2a
Xtr-Mir-130-P2a
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
contig149088: 250-312 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AAACAGGCUCAGAACCUGCUGGGGUCCUCUGCCAUGAUGACGUUGCACUACUGUUCCAAACGCCCAAGCAGUGCAACAGUAUUGUCAUAGCAGAGGGCCUACGCACAUCCUACCGGUAGGCCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAACAGGCUCAGAACCU-- UG C UG C---| A GUUCCA
GC GGGUCCUCUGC AUGA A GUUGCACU CU A
CG UCCGGGAGACG UACU U CAACGUGA GA A
UCCGGAUGGCCAUCCUACA CA A GU AUGA^ C ACCCGC
120 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Gmo-Mir-130-P2a1_5p* |
| mirBase accession | None |
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| Sequence |
0- GCCAUGAUGACGUUGCACUACU -22
Get sequence
|
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| Mature sequence |
Gmo-Mir-130-P2a1_3p |
| mirBase accession | MIMAT0044012 |
|---|
| Sequence |
38- CAGUGCAACAGUAUUGUCAUAGCAG -63
Get sequence
|
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