| MirGeneDB ID | Gmo-Mir-130-P1a2 |
|---|
| Family name |
MIR-130 (all species) |
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| Seed |
AGUGCAA |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-130b
|
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| Paralogues |
Gmo-Mir-130-P1a1
Gmo-Mir-130-P2a1
Gmo-Mir-130-P2a2
Gmo-Mir-130-P2b1
Gmo-Mir-130-P3b1
|
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| Orthologues |
Aca-Mir-130-P1a
Ami-Mir-130-P1a
Cli-Mir-130-P1a
Cmi-Mir-130-P1a
Cpi-Mir-130-P1a
Dre-Mir-130-P1a2
Gga-Mir-130-P1a
Gja-Mir-130-P1a
Lch-Mir-130-P1a
Loc-Mir-130-P1a
Mal-Mir-130-P1a2
Mdo-Mir-130-P1a
Mun-Mir-130-P1a
Oan-Mir-130-P1a
Pbv-Mir-130-P1a
Sha-Mir-130-P1a
Spt-Mir-130-P1a
Sto-Mir-130-P1a
Tgu-Mir-130-P1a
Tni-Mir-130-P1a2
Xtr-Mir-130-P1a
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_3571: 112285-112343 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GCUAAGGGAGUCGUCAUGUUGUCGUCCUCUGCCCUUUUCCUCUUGCACUACUGGACGUUGAGAUGAGUAGUGCAAUAUUAAAAGGGCAUUGGCUGAUGAAACUGAGACACACAUACACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCUAAGGGAGUCGUCAUG--|UG U UC CCUC GGACGU
U UCG CC UGCCCUUUU UUGCACUACU \
A AGU GG ACGGGAAAA AACGUGAUGA U
ACACAUACACACAGAGUCAA^GU C UU UUAU GUAGAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Gmo-Mir-130-P1a2_5p* |
| mirBase accession | MIMAT0044229 |
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| Sequence |
0- GCCCUUUUCCUCUUGCACUACU -22
Get sequence
|
|---|
| Mature sequence |
Gmo-Mir-130-P1a2_3p |
| mirBase accession | MIMAT0044230 |
|---|
| Sequence |
37- UAGUGCAAUAUUAAAAGGGCAU -59
Get sequence
|
|---|
