MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-130-P1a2

Family name MIR-130 (all species)
Seed AGUGCAA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-130
Paralogues Tni-Mir-130-P2a2 
Orthologues Aca-Mir-130-P1a  Ami-Mir-130-P1a  Cli-Mir-130-P1a  Cmi-Mir-130-P1a  Cpi-Mir-130-P1a  Dre-Mir-130-P1a2  Gga-Mir-130-P1a  Gja-Mir-130-P1a  Gmo-Mir-130-P1a2  Lch-Mir-130-P1a  Loc-Mir-130-P1a  Mal-Mir-130-P1a2  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Sha-Mir-130-P1a  Spt-Mir-130-P1a  Sto-Mir-130-P1a  Tgu-Mir-130-P1a  Xtr-Mir-130-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 4: 1515785-1515843 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-130-P1a2)		 Mir-130-P1a2 4: 1515785-1515843 [+] UCSC Ensembl
Mir-130-P2a2 4: 1516061-1516123 [+] UCSC Ensembl
Mir-218-P3 4: 1554674-1554731 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACGCGUGCAGAGGCCAUGUUGUUGUCCUCUGCCCUUUUUCUGUUGCACCACUGGACACUGAGAUGAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGAUGAGACCUGUCCCGCUCAACCUG
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Structure
        10          20        30        40        50         
ACGCGUGCAGAGGCCAUG--|UG   U  UC         UC        CA  GGACAC 
                    U  UUG CC  UGCCCUUUU  UGUUGCAC  CU      \
                    A  AGU GG  ACGGGAAAA  AUAACGUG  GA      U
GUCCAACUCGCCCUGUCCAG^GU   C  UU         UU        AC  GUAGAG 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-130-P1a2_5p*
mirBase accessionNone
Sequence 
0- GCCCUUUUUCUGUUGCACCACU -22
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Mature sequence

Tni-Mir-130-P1a2_3p
mirBase accessionMIMAT0002990
Sequence 
37- CAGUGCAAUAUUAAAAGGGCAU -59
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