| MirGeneDB ID | Pmi-Mir-2005 |
|---|
| Family name |
MIR-2005 (all species) |
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| Seed |
GUCCAAU |
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| Species |
Bat starfish (Patiria miniata) |
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| MiRBase ID |
pmi-mir-2005
|
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| Paralogues |
|
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| Orthologues |
Spu-Mir-2005
|
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| Node of Origin (locus) |
Eleutherozoa
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| Node of Origin (family) |
Eleutherozoa
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Genome context
(Pmin1) |
JH777837.1: 23108-23169 [+]
|
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Precursor
(pre-Mir +30nt flank) |
UCGACAUGGAACUCUUUCAAUAUCAGGUGAAGUCCAAUAGGGAGGGCAUCGCAGGUGAUUGACAAGCACUGCGGUCCAACCUAUUGGUCAAUACCUGGUCACAUGACACAUCGGAGGCGGGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCGACAUGGAACUCUUUCAAU--| AAGU GA AU GUGAUU
AUCAGGUG CCAAUAGG GGGC CGCAG G
UGGUCCAU GGUUAUCC CCUG GCGUC A
GGGGCGGAGGCUACACAGUACAC^ AACU AA -- ACGAAC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Although there is no star recorded for Mir-2005 expression of the 5p arm is deeply conserved across eleutherozoan echinoderms. |
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Pmi-Mir-2005_5p |
| mirBase accession | MIMAT0032178 |
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| Sequence |
0- AGUCCAAUAGGGAGGGCAUCGCAG -24
Get sequence
|
|---|
| Star sequence |
Pmi-Mir-2005_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
40- GCGGUCCAACCUAUUGGUCAAU -62
Get sequence
|
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